Transcript: Human NM_001251962.1

Homo sapiens Rho guanine nucleotide exchange factor 26 (ARHGEF26), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-02-23
Taxon:
Homo sapiens (human)
Gene:
ARHGEF26 (26084)
Length:
5254
CDS:
285..2900

Additional Resources:

NCBI RefSeq record:
NM_001251962.1
NBCI Gene record:
ARHGEF26 (26084)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001251962.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423258 CAAATGGCCTTGCCGCTAATA pLKO_005 808 CDS 100% 13.200 18.480 N ARHGEF26 n/a
2 TRCN0000048289 CGGGTTACTAATTACGGATTT pLKO.1 416 CDS 100% 10.800 15.120 N ARHGEF26 n/a
3 TRCN0000048291 CCGAAGTATGAAGTCTGCAAA pLKO.1 2085 CDS 100% 4.950 6.930 N ARHGEF26 n/a
4 TRCN0000436232 TAGCAAGTTGGTTCGACTATG pLKO_005 2123 CDS 100% 10.800 8.640 N ARHGEF26 n/a
5 TRCN0000413720 ATATCCTCTGAACATTCATAT pLKO_005 1626 CDS 100% 13.200 9.240 N ARHGEF26 n/a
6 TRCN0000415924 ATGTCAAGCTACAATTGATAA pLKO_005 2831 CDS 100% 13.200 9.240 N ARHGEF26 n/a
7 TRCN0000415484 AGAGACAAGAGGCTATCTTTG pLKO_005 1600 CDS 100% 10.800 7.560 N ARHGEF26 n/a
8 TRCN0000425125 ATCTCTGCTCCTCCTAGTTTC pLKO_005 3170 3UTR 100% 10.800 7.560 N ARHGEF26 n/a
9 TRCN0000048288 GCATCCACATTTGACCCATAT pLKO.1 1851 CDS 100% 10.800 7.560 N ARHGEF26 n/a
10 TRCN0000424184 TCCTTAAGAGATCAGCTATTG pLKO_005 2403 CDS 100% 10.800 7.560 N ARHGEF26 n/a
11 TRCN0000048292 GCAAGTCTACTTCTTTCTCTT pLKO.1 2321 CDS 100% 4.950 3.465 N ARHGEF26 n/a
12 TRCN0000048290 CGCGAATGAGAAAGTGGAGAT pLKO.1 2543 CDS 100% 4.050 2.835 N ARHGEF26 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001251962.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11806 pDONR223 100% 34.5% 34.4% None 1_1710del;2061C>G n/a
2 ccsbBroad304_11806 pLX_304 0% 34.5% 34.4% V5 1_1710del;2061C>G n/a
3 TRCN0000474724 GTCAACTGGGGCATCTGGCACCTC pLX_317 44% 34.5% 34.4% V5 1_1710del;2061C>G n/a
Download CSV