Transcript: Human NM_001254729.1

Homo sapiens adaptor related protein complex 4 subunit sigma 1 (AP4S1), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
AP4S1 (11154)
Length:
4135
CDS:
265..699

Additional Resources:

NCBI RefSeq record:
NM_001254729.1
NBCI Gene record:
AP4S1 (11154)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001254729.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000381990 ATGAGTATTTCAGCCGAGTGA pLKO_005 539 CDS 100% 2.640 3.696 N AP4S1 n/a
2 TRCN0000113121 GCCGAGTGAGTGAATTAGATA pLKO.1 551 CDS 100% 5.625 4.500 N Ap4s1 n/a
3 TRCN0000059846 CGACTTTCTAAGTACTATGAA pLKO.1 307 CDS 100% 5.625 3.938 N AP4S1 n/a
4 TRCN0000059844 CGAGATGGCTATTTATGAATT pLKO.1 492 CDS 100% 0.000 0.000 N AP4S1 n/a
5 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1792 3UTR 100% 5.625 2.813 Y KLHL30 n/a
6 TRCN0000084008 CGCCTATAATCCCAGCACTTT pLKO.1 3485 3UTR 100% 4.950 2.475 Y NPHS1 n/a
7 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 1755 3UTR 100% 4.950 2.475 Y LOC387873 n/a
8 TRCN0000165534 GAGACAGGGTTTCACCATGTT pLKO.1 1295 3UTR 100% 4.950 2.475 Y n/a
9 TRCN0000140719 GATCACTTGAGGTCAGGAGTT pLKO.1 2455 3UTR 100% 4.050 2.025 Y P3H4 n/a
10 TRCN0000165299 GATCACTTGAGGTCAGGAGTT pLKO.1 2455 3UTR 100% 4.050 2.025 Y ORAI2 n/a
11 TRCN0000352971 GATCACTTGAGGTCAGGAGTT pLKO_005 2455 3UTR 100% 4.050 2.025 Y P3H4 n/a
12 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1792 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001254729.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.