Transcript: Human NM_001256022.1

Homo sapiens triadin (TRDN), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-08-05
Taxon:
Homo sapiens (human)
Gene:
TRDN (10345)
Length:
1413
CDS:
319..822

Additional Resources:

NCBI RefSeq record:
NM_001256022.1
NBCI Gene record:
TRDN (10345)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001256022.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000153017 GCTGTTGCCATCGTTATGTTT pLKO.1 502 CDS 100% 5.625 3.938 N TRDN n/a
2 TRCN0000152213 CAAGAGAAACCTGAAAGGAAA pLKO.1 769 CDS 100% 4.950 3.465 N TRDN n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001256022.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11486 pDONR223 100% 99.8% 99.4% None 383C>G n/a
2 ccsbBroad304_11486 pLX_304 0% 99.8% 99.4% V5 383C>G n/a
3 TRCN0000481515 ACTGCCGGCGACGTACGGTTCCAG pLX_317 98.4% 99.8% 99.4% V5 383C>G n/a
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