Transcript: Human NM_001256681.1

Homo sapiens protein only RNase P catalytic subunit (PRORP), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-08-05
Taxon:
Homo sapiens (human)
Gene:
PRORP (9692)
Length:
1589
CDS:
442..1077

Additional Resources:

NCBI RefSeq record:
NM_001256681.1
NBCI Gene record:
PRORP (9692)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001256681.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000134862 CCTACCAATAGCAGAATCAAT pLKO.1 1420 3UTR 100% 5.625 7.875 N PRORP n/a
2 TRCN0000134244 CCTGAGATACTCATGTTGTTT pLKO.1 1450 3UTR 100% 5.625 7.875 N PRORP n/a
3 TRCN0000136809 CGGGAATCACTGCAGGTTTAT pLKO.1 792 CDS 100% 13.200 10.560 N PRORP n/a
4 TRCN0000435788 CACTTAGCTTGGGTGACTAAT pLKO_005 1351 3UTR 100% 13.200 9.240 N PRORP n/a
5 TRCN0000136693 GATGACATCTCGGAGGATGAT pLKO.1 742 CDS 100% 4.950 3.465 N PRORP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001256681.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000474453 TGCGTTCCGCAAATACCAGACGTC pLX_317 31.2% 36.1% 36.1% V5 0_1ins1116 n/a
2 ccsbBroadEn_07467 pDONR223 100% 36.1% 36% None 0_1ins1116;628A>N n/a
3 ccsbBroad304_07467 pLX_304 0% 36.1% 36% V5 0_1ins1116;628A>N n/a
4 ccsbBroadEn_15675 pDONR223 0% 36.1% 36% None 0_1ins1116;194A>G n/a
5 ccsbBroad304_15675 pLX_304 0% 36.1% 36% V5 0_1ins1116;194A>G n/a
6 TRCN0000478771 TCGCGTCCAGCTATGGTGGATTAA pLX_317 17.8% 36.1% 36% V5 0_1ins1116;194A>G n/a
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