Transcript: Human NM_001256727.1

Homo sapiens ubiquitin specific peptidase 39 (USP39), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-08-05
Taxon:
Homo sapiens (human)
Gene:
USP39 (10713)
Length:
2183
CDS:
224..1687

Additional Resources:

NCBI RefSeq record:
NM_001256727.1
NBCI Gene record:
USP39 (10713)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001256727.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000001151 CCTTCCAGACAACTATGAGAT pLKO.1 511 CDS 100% 4.950 6.930 N USP39 n/a
2 TRCN0000272712 CCTTCCAGACAACTATGAGAT pLKO_005 511 CDS 100% 4.950 6.930 N USP39 n/a
3 TRCN0000001154 GCCGGGTATTGTGGGACTGAA pLKO.1 652 CDS 100% 1.650 2.310 N USP39 n/a
4 TRCN0000272711 CCCGTACCTGGACACCATTAA pLKO_005 304 CDS 100% 13.200 9.240 N USP39 n/a
5 TRCN0000001150 GATTTGGAAGAGGCGAGATAA pLKO.1 1639 CDS 100% 13.200 9.240 N USP39 n/a
6 TRCN0000284817 GATTTGGAAGAGGCGAGATAA pLKO_005 1639 CDS 100% 13.200 9.240 N USP39 n/a
7 TRCN0000001153 GTTGCCTCCATATCTAATCTT pLKO.1 1324 CDS 100% 5.625 3.938 N USP39 n/a
8 TRCN0000284816 GTTGCCTCCATATCTAATCTT pLKO_005 1324 CDS 100% 5.625 3.938 N USP39 n/a
9 TRCN0000001152 CTGAATAACATAAAGGCCAAT pLKO.1 668 CDS 100% 4.050 2.835 N USP39 n/a
10 TRCN0000272660 TGTGGCTGATGATGGTAAATA pLKO_005 1719 3UTR 100% 15.000 9.000 N USP39 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001256727.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02512 pDONR223 100% 84.3% 84.4% None (many diffs) n/a
2 ccsbBroad304_02512 pLX_304 0% 84.3% 84.4% V5 (many diffs) n/a
3 TRCN0000472272 TGTCTCGCAGCTACAGTGGCTTAG pLX_317 26.4% 84.3% 84.4% V5 (many diffs) n/a
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