Construct: ORF TRCN0000472272

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015242.1_s317c1
Derived from:
ccsbBroadEn_02512
DNA Barcode:
TGTCTCGCAGCTACAGTGGCTTAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
USP39 (10713)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472272
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10713 USP39 ubiquitin specific peptidas... NM_001256725.2 100% 100%
2 human 10713 USP39 ubiquitin specific peptidas... NM_006590.4 100% 100%
3 human 10713 USP39 ubiquitin specific peptidas... NM_001256726.2 86.3% 84.2% 1427_1428ins136;1464_1465ins95
4 human 10713 USP39 ubiquitin specific peptidas... NM_001256727.1 84.3% 84.4% (many diffs)
5 human 10713 USP39 ubiquitin specific peptidas... NM_001256728.1 79.8% 79.1% (many diffs)
6 human 10713 USP39 ubiquitin specific peptidas... XR_939653.2 78.5% 1_61del;1625_1710del;1843_2157del
7 human 10713 USP39 ubiquitin specific peptidas... XR_939652.2 73% 1_61del;1625_1710del;1843_2320del
8 human 10713 USP39 ubiquitin specific peptidas... NR_046347.2 70% (many diffs)
9 human 10713 USP39 ubiquitin specific peptidas... XR_001738593.1 65.4% (many diffs)
10 human 10713 USP39 ubiquitin specific peptidas... XM_006711922.2 52.3% 52.3% 0_1ins807
11 human 10713 USP39 ubiquitin specific peptidas... XM_006711923.2 52.3% 52.3% 0_1ins807
12 human 10713 USP39 ubiquitin specific peptidas... XM_011532487.1 52.3% 52.3% 0_1ins807
13 human 10713 USP39 ubiquitin specific peptidas... XM_011532488.1 52.3% 52.3% 0_1ins807
14 human 10713 USP39 ubiquitin specific peptidas... XM_017003182.1 52.3% 52.3% 0_1ins807
15 mouse 28035 Usp39 ubiquitin specific peptidas... NM_138592.4 89.7% 97.3% (many diffs)
16 mouse 28035 Usp39 ubiquitin specific peptidas... XM_006506216.3 86.8% 93.2% (many diffs)
17 mouse 28035 Usp39 ubiquitin specific peptidas... XM_017321609.1 47.6% 52.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1761
ORF length:
1695
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc cggccggtct aagcgggagt ctcgcggttc cactcgcggg aagcgagagt
121ctgagtcgcg gggcagctcc ggtcgcgtca agcgggagcg agatcgggag cgggagcctg
181aggcggcgag ctcccggggc agccctgtgc gcgtgaagcg ggagttcgag ccggcgagcg
241cgcgcgaggc cccggcttct gttgtcccgt ttgtgcgggt gaagcgggag cgcgaggtcg
301atgaggactc ggagcctgag cgggaggtgc gagcaaagaa tggccgagtg gattctgagg
361accggaggag ccgccactgc ccgtacctgg acaccattaa caggagtgtg ctggactttg
421actttgagaa actgtgttct atctccctct cacacatcaa tgcttatgcc tgtctggtgt
481gtggcaagta ctttcaaggc cggggtttga agtctcacgc ctacattcac agtgtccagt
541ttagccacca tgttttcctc aacctccaca ccctcaagtt ttactgcctt ccagacaact
601atgagatcat cgattcctca ttggaggata tcacgtatgt gttgaagccc actttcacaa
661agcagcaaat tgcaaacttg gacaagcaag ccaaattgtc ccgggcatat gatggtacca
721cttacctgcc gggtattgtg ggactgaata acataaaggc caatgattat gccaacgctg
781tccttcaggc tctatctaat gttcctcctc tccggaacta ctttctggaa gaagacaatt
841ataagaacat caaacgtcct ccaggggata tcatgttctt gttggtccag cgttttggag
901agctgatgag aaagctctgg aaccctcgaa atttcaaggc acatgtgtct ccccatgaga
961tgcttcaggc agttgtactt tgcagtaaga agacttttca gatcaccaaa caaggagatg
1021gcgttgactt tctgtcttgg tttctgaatg ctctgcactc agctctgggg ggcacaaaga
1081agaaaaagaa gactattgtg actgatgttt tccaggggtc catgaggatc ttcactaaaa
1141agcttcccca tcctgatctg ccagcagaag aaaaagagca gttgctccat aatgacgagt
1201accaggagac aatggtggag tccactttta tgtacctgac gctggacctt cctactgccc
1261ccctctacaa ggacgagaag gagcagctca tcattcccca agtgccactc ttcaacaTCC
1321TGGCTAAGTT CAATGGCATC ACTGAGAAGG AATATAAGAC TTACAAGGAG AACTTTCTGA
1381AGCGCTTCCA GCTTACCAAG TTGCCTCCAT ATCTAATCTT TTGTATCAAG AGATTCACTA
1441AGAACAACTT CTTTGTTGAG AAGAATCCAA CTATTGTCAA TTTCCCTATT ACAAATGTGG
1501ATCTGAGAGA ATACTTGTCT GAAGAAGTAC AAGCAGTACA CAAGAATACC ACCTATGACC
1561TCATTGCCAA CATCGTGCAT GACGGCAAGC CCTCCGAGGG CTCCTACCGG ATCCACGTGC
1621TTCATCATGG GACAGGCAAA TGGTATGAAT TACAAGACCT CCAGGTGACT GACATCCTTC
1681CCCAGATGAT CACACTGTCA GAGGCTTACA TTCAGATTTG GAAGAGGCGA GATAATGATG
1741AAACCAACCA GCAGGGGGCT TGCCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1801CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1861AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATGTC TCGCAGCTAC
1921AGTGGCTTAG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)