Transcript: Human NM_001258311.2

Homo sapiens piggyBac transposable element derived 5 (PGBD5), mRNA.

Source:
NCBI, updated 2019-08-02
Taxon:
Homo sapiens (human)
Gene:
PGBD5 (79605)
Length:
10914
CDS:
405..1979

Additional Resources:

NCBI RefSeq record:
NM_001258311.2
NBCI Gene record:
PGBD5 (79605)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001258311.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000276201 GATCGATGAGGATCCTGTATT pLKO_005 1181 CDS 100% 13.200 18.480 N PGBD5 n/a
2 TRCN0000133981 CAGACCAGAAACAAGGAATTT pLKO.1 3296 3UTR 100% 13.200 9.240 N PGBD5 n/a
3 TRCN0000276200 CAGACCAGAAACAAGGAATTT pLKO_005 3296 3UTR 100% 13.200 9.240 N PGBD5 n/a
4 TRCN0000276253 CAGGCAAGAACTACATCATTT pLKO_005 1405 CDS 100% 13.200 9.240 N PGBD5 n/a
5 TRCN0000138412 CCTCGTCCTCACTCAGTTATT pLKO.1 3404 3UTR 100% 13.200 9.240 N PGBD5 n/a
6 TRCN0000138343 CCTGACGCTGTTTGAAGAGTT pLKO.1 1448 CDS 100% 4.950 3.465 N PGBD5 n/a
7 TRCN0000285502 CCTGACGCTGTTTGAAGAGTT pLKO_005 1448 CDS 100% 4.950 3.465 N PGBD5 n/a
8 TRCN0000135121 CCAGATTTATGTCCACCTGAA pLKO.1 1295 CDS 100% 4.050 2.835 N PGBD5 n/a
9 TRCN0000136271 GAGTTTGAGAAGCAAGGGATT pLKO.1 1464 CDS 100% 4.050 2.835 N PGBD5 n/a
10 TRCN0000276252 GAGTTTGAGAAGCAAGGGATT pLKO_005 1464 CDS 100% 4.050 2.835 N PGBD5 n/a
11 TRCN0000138100 GCTGTGCCCTTTAATGGGATT pLKO.1 3561 3UTR 100% 4.050 2.835 N PGBD5 n/a
12 TRCN0000138541 CTACATGATCTCCACCAGCAT pLKO.1 920 CDS 100% 2.640 1.848 N PGBD5 n/a
13 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 5263 3UTR 100% 4.950 2.475 Y CFLAR n/a
14 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 5263 3UTR 100% 4.950 2.475 Y C19orf31 n/a
15 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 3821 3UTR 100% 13.200 6.600 Y LIAS n/a
16 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 5261 3UTR 100% 4.950 2.475 Y ERN2 n/a
17 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 5261 3UTR 100% 4.950 2.475 Y P3H4 n/a
18 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 5261 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001258311.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.