Transcript: Human NM_001270526.2

Homo sapiens stomatin (STOM), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
STOM (2040)
Length:
3054
CDS:
64..657

Additional Resources:

NCBI RefSeq record:
NM_001270526.2
NBCI Gene record:
STOM (2040)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001270526.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000029161 CACCGTTATAACTTTCCCAAT pLKO.1 186 CDS 100% 4.050 5.670 N STOM n/a
2 TRCN0000319395 CACCGTTATAACTTTCCCAAT pLKO_005 186 CDS 100% 4.050 5.670 N STOM n/a
3 TRCN0000029163 GCGTGGATGGTGTGGTCTATT pLKO.1 413 CDS 100% 13.200 10.560 N STOM n/a
4 TRCN0000319309 GCGTGGATGGTGTGGTCTATT pLKO_005 413 CDS 100% 13.200 10.560 N STOM n/a
5 TRCN0000029160 CCATAGATATGCTGCAAGGAA pLKO.1 787 3UTR 100% 3.000 2.100 N STOM n/a
6 TRCN0000319382 CCATAGATATGCTGCAAGGAA pLKO_005 787 3UTR 100% 3.000 2.100 N STOM n/a
7 TRCN0000029162 CATCTTTAGATTGGGTCGCAT pLKO.1 255 CDS 100% 2.640 1.848 N STOM n/a
8 TRCN0000319308 CATCTTTAGATTGGGTCGCAT pLKO_005 255 CDS 100% 2.640 1.848 N STOM n/a
9 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1544 3UTR 100% 5.625 2.813 Y KLHL30 n/a
10 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1544 3UTR 100% 5.625 2.813 Y EID2B n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001270526.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06166 pDONR223 100% 68.2% 67.7% None 15G>N;588_589insGTG;591_592ins270 n/a
2 ccsbBroad304_06166 pLX_304 0% 68.2% 67.7% V5 15G>N;588_589insGTG;591_592ins270 n/a
3 TRCN0000479857 ACCATACGAGCTATAAAGGCACCT pLX_317 43.8% 68.2% 67.7% V5 15G>N;588_589insGTG;591_592ins270 n/a
Download CSV