Transcript: Human NM_001271087.2

Homo sapiens vacuolar protein sorting 72 homolog (VPS72), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
VPS72 (6944)
Length:
1544
CDS:
77..1204

Additional Resources:

NCBI RefSeq record:
NM_001271087.2
NBCI Gene record:
VPS72 (6944)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001271087.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000335929 GAGTTCTACCAGACGACTTAT pLKO_005 158 CDS 100% 13.200 18.480 N VPS72 n/a
2 TRCN0000380595 TTACGGTCACTGGAGACATAT pLKO_005 626 CDS 100% 13.200 18.480 N VPS72 n/a
3 TRCN0000005683 GCAGGTTCATAAGAAGCGGAA pLKO.1 673 CDS 100% 2.160 3.024 N VPS72 n/a
4 TRCN0000381176 AGAAGGCACTACTGCCATTAG pLKO_005 417 CDS 100% 10.800 8.640 N VPS72 n/a
5 TRCN0000005682 GAGATGTCTAGTCCTCAGAAA pLKO.1 1206 3UTR 100% 4.950 3.960 N VPS72 n/a
6 TRCN0000335845 GAGATGTCTAGTCCTCAGAAA pLKO_005 1206 3UTR 100% 4.950 3.960 N VPS72 n/a
7 TRCN0000379663 AGATCACAGAAGAGCTTAATT pLKO_005 606 CDS 100% 15.000 10.500 N VPS72 n/a
8 TRCN0000335930 AGTAGTCACCAAGGCCTATAA pLKO_005 325 CDS 100% 13.200 9.240 N VPS72 n/a
9 TRCN0000381004 ACGAAGTGGACTCTGACTTTG pLKO_005 240 CDS 100% 10.800 7.560 N VPS72 n/a
10 TRCN0000379536 AGGAACCTCTCAAGAGCTTAA pLKO_005 345 CDS 100% 10.800 7.560 N VPS72 n/a
11 TRCN0000380543 GCCCATAATCACCTATCATTC pLKO_005 703 CDS 100% 10.800 7.560 N VPS72 n/a
12 TRCN0000382516 TAGTCCTCAGAAACTTCTTTC pLKO_005 1214 3UTR 100% 10.800 7.560 N VPS72 n/a
13 TRCN0000005684 GAGGCTTACAAGAAGTACATT pLKO.1 1070 CDS 100% 5.625 3.938 N VPS72 n/a
14 TRCN0000335927 GAGGCTTACAAGAAGTACATT pLKO_005 1070 CDS 100% 5.625 3.938 N VPS72 n/a
15 TRCN0000380884 TCCGGAGATGATGAGTATCAA pLKO_005 197 CDS 100% 5.625 3.938 N VPS72 n/a
16 TRCN0000005685 AGAGATGTCTAGTCCTCAGAA pLKO.1 1205 CDS 100% 4.950 3.465 N VPS72 n/a
17 TRCN0000005686 CCTGTTACAGACATACCCTAT pLKO.1 1019 CDS 100% 4.050 2.835 N VPS72 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001271087.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.