Transcript: Mouse NM_001272035.1

Mus musculus solute carrier family 33 (acetyl-CoA transporter), member 1 (Slc33a1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Slc33a1 (11416)
Length:
2430
CDS:
544..2196

Additional Resources:

NCBI RefSeq record:
NM_001272035.1
NBCI Gene record:
Slc33a1 (11416)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001272035.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000042921 CTACTCTTTCTTTACGTGCTT pLKO.1 775 CDS 100% 2.640 3.696 N SLC33A1 n/a
2 TRCN0000306047 GGACCGTTTGCTCGGAAATAT pLKO_005 1029 CDS 100% 15.000 12.000 N Slc33a1 n/a
3 TRCN0000306046 AGCTGCTATTCTCAATTATAA pLKO_005 1442 CDS 100% 15.000 10.500 N Slc33a1 n/a
4 TRCN0000079822 CCACTCCTCATCAGCAAGTAT pLKO.1 1624 CDS 100% 5.625 3.938 N Slc33a1 n/a
5 TRCN0000079819 GCCGTCTACTTTAAGAACTTT pLKO.1 934 CDS 100% 5.625 3.938 N Slc33a1 n/a
6 TRCN0000325871 GCCGTCTACTTTAAGAACTTT pLKO_005 934 CDS 100% 5.625 3.938 N Slc33a1 n/a
7 TRCN0000079821 CCTTCTGATTCTAACGTCAAA pLKO.1 1488 CDS 100% 4.950 3.465 N Slc33a1 n/a
8 TRCN0000079820 GCCTTCTGATTCTAACGTCAA pLKO.1 1487 CDS 100% 4.050 2.835 N Slc33a1 n/a
9 TRCN0000325794 GCCTTCTGATTCTAACGTCAA pLKO_005 1487 CDS 100% 4.050 2.835 N Slc33a1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001272035.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02104 pDONR223 100% 87.5% 93.4% None (many diffs) n/a
2 ccsbBroad304_02104 pLX_304 0% 87.5% 93.4% V5 (many diffs) n/a
3 TRCN0000474996 TTTTATCCTGCCAGCTCTTGTGTT pLX_317 3.7% 87.5% 93.4% V5 (many diffs) n/a
Download CSV