Transcript: Human NM_001278541.1

Homo sapiens carboxypeptidase B2 (CPB2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
CPB2 (1361)
Length:
1655
CDS:
68..1228

Additional Resources:

NCBI RefSeq record:
NM_001278541.1
NBCI Gene record:
CPB2 (1361)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001278541.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000371898 TATTCCTATACACGAAGTAAA pLKO_005 914 CDS 100% 13.200 18.480 N CPB2 n/a
2 TRCN0000046893 GAACCTAATAAGTGCTACTTT pLKO.1 1364 3UTR 100% 5.625 7.875 N CPB2 n/a
3 TRCN0000046894 CCGTTCTTTCTATGCGAACAA pLKO.1 679 CDS 100% 4.950 6.930 N CPB2 n/a
4 TRCN0000046896 GCATCCTGATATGCTTACAAA pLKO.1 484 CDS 100% 5.625 3.938 N CPB2 n/a
5 TRCN0000046895 GCTGACCTTATTGTGAAGAAA pLKO.1 242 CDS 100% 5.625 3.938 N CPB2 n/a
6 TRCN0000046897 CGCATCGTACTATGAACAGTA pLKO.1 415 CDS 100% 4.950 3.465 N CPB2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001278541.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06027 pDONR223 100% 91% 91% None 291T>C;591_592ins111;929T>C n/a
2 ccsbBroad304_06027 pLX_304 0% 91% 91% V5 291T>C;591_592ins111;929T>C n/a
3 TRCN0000466365 TCGCTTATATTCATGCGACGACGA pLX_317 29.6% 91% 91% V5 291T>C;591_592ins111;929T>C n/a
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