Transcript: Human NM_001282574.1

Homo sapiens zinc finger CCHC-type containing 17 (ZCCHC17), transcript variant 10, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
ZCCHC17 (51538)
Length:
1489
CDS:
150..590

Additional Resources:

NCBI RefSeq record:
NM_001282574.1
NBCI Gene record:
ZCCHC17 (51538)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001282574.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000437564 CAAGGTCTGGTCCATCGAACT pLKO_005 270 CDS 100% 4.050 5.670 N ZCCHC17 n/a
2 TRCN0000427497 GATCCCAACAATGTTATCATT pLKO_005 444 CDS 100% 5.625 4.500 N ZCCHC17 n/a
3 TRCN0000431777 AGACTCAATAGTGAGAATATA pLKO_005 799 3UTR 100% 15.000 10.500 N ZCCHC17 n/a
4 TRCN0000421917 CCAGAGCTGGATTCCTGTAAA pLKO_005 1036 3UTR 100% 13.200 9.240 N ZCCHC17 n/a
5 TRCN0000062684 AGATAGTAGATGTTGGAGATA pLKO.1 325 CDS 100% 4.950 3.465 N ZCCHC17 n/a
6 TRCN0000062683 GCTCAGACTCTGAGAGTGATA pLKO.1 617 3UTR 100% 4.950 3.465 N ZCCHC17 n/a
7 TRCN0000062685 GTTGCTATGGTGACAGACTAT pLKO.1 216 CDS 100% 4.950 3.465 N ZCCHC17 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001282574.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03330 pDONR223 100% 60.5% 60.1% None 415_416ins146;438_439ins139 n/a
2 ccsbBroad304_03330 pLX_304 0% 60.5% 60.1% V5 415_416ins146;438_439ins139 n/a
3 TRCN0000480571 ACTCGGCCCGCCGTGAGCTCTGCT pLX_317 62.8% 60.5% 60.1% V5 415_416ins146;438_439ins139 n/a
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