Construct: ORF TRCN0000480571
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005695.1_s317c1
- Derived from:
- ccsbBroadEn_03330
- DNA Barcode:
- ACTCGGCCCGCCGTGAGCTCTGCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZCCHC17 (51538)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480571
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51538 | ZCCHC17 | zinc finger CCHC-type conta... | NM_001282568.1 | 100% | 100% | |
| 2 | human | 51538 | ZCCHC17 | zinc finger CCHC-type conta... | NM_016505.3 | 100% | 100% | |
| 3 | human | 51538 | ZCCHC17 | zinc finger CCHC-type conta... | NM_001282569.1 | 93.5% | 92.5% | (many diffs) |
| 4 | human | 51538 | ZCCHC17 | zinc finger CCHC-type conta... | XM_006710681.4 | 93.5% | 92.5% | (many diffs) |
| 5 | human | 51538 | ZCCHC17 | zinc finger CCHC-type conta... | NM_001282570.1 | 90% | 90% | 0_1ins72 |
| 6 | human | 51538 | ZCCHC17 | zinc finger CCHC-type conta... | NM_001282566.1 | 87.9% | 81.4% | (many diffs) |
| 7 | human | 51538 | ZCCHC17 | zinc finger CCHC-type conta... | NM_001282567.1 | 81.2% | 81.2% | 0_1ins72;347_424del |
| 8 | human | 51538 | ZCCHC17 | zinc finger CCHC-type conta... | NM_001282571.1 | 74.2% | 69.7% | 0_1ins85;37_38ins101 |
| 9 | human | 51538 | ZCCHC17 | zinc finger CCHC-type conta... | NM_001282572.1 | 63.3% | 52.2% | 317_318ins247;477_504del |
| 10 | human | 51538 | ZCCHC17 | zinc finger CCHC-type conta... | NM_001282574.1 | 60.5% | 60.1% | 415_416ins146;438_439ins139 |
| 11 | human | 51538 | ZCCHC17 | zinc finger CCHC-type conta... | NM_001282573.1 | 57.6% | 44.8% | (many diffs) |
| 12 | mouse | 619605 | Zcchc17 | zinc finger, CCHC domain co... | NM_153160.5 | 90.4% | 95% | (many diffs) |
| 13 | mouse | 619605 | Zcchc17 | zinc finger, CCHC domain co... | XM_006503257.3 | 81.1% | 85% | (many diffs) |
| 14 | mouse | 619605 | Zcchc17 | zinc finger, CCHC domain co... | NM_001355400.1 | 74.6% | 78% | (many diffs) |
| 15 | mouse | 619605 | Zcchc17 | zinc finger, CCHC domain co... | XM_030253690.1 | 74.6% | 78% | (many diffs) |
| 16 | mouse | 619605 | Zcchc17 | zinc finger, CCHC domain co... | NM_001355398.1 | 71.6% | 75.1% | (many diffs) |
| 17 | mouse | 619605 | Zcchc17 | zinc finger, CCHC domain co... | NM_001355399.1 | 71.6% | 75.1% | (many diffs) |
| 18 | mouse | 619605 | Zcchc17 | zinc finger, CCHC domain co... | NR_149716.1 | 26.3% | (many diffs) | |
| 19 | mouse | 619605 | Zcchc17 | zinc finger, CCHC domain co... | NR_149717.1 | 24.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 789
- ORF length:
- 723
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa ttcaggaagg cctgagacca tggaaaactt gcctgctctc tacactattt 121 tccaaggaga ggttgctatg gtgacagact atggggcctt tatcaaaatc ccaggctgtc 181 ggaagcaagg tctggtccat cgaactcata tgtcatcctg tcgggtggat aagccctctg 241 agatagtaga tgttggagat aaagtgtggg tgaagcttat tggccgagag atgaaaaatg 301 atagaataaa agtatccctc tccatgaagg ttGTCAATCA AGGGACTGGG AAAGACCTTG 361 ATCCCAACAA TGTTATCATT GAGCAAGAAG AGAGGCGGAG GCGATCCTTC CAGGATTACA 421 CTGGGCAGAA GATCACCCTT GAGGCTGTCT TGAACACTAC CTGCAAGAAG TGTGGCTGTA 481 AAGGCCACTT TGCAAAAGAT TGTTTCATGC AACCAGGTGG GACTAAATAC TCTCTGATAC 541 CTGATGAGGA AGAGGAAAAG GAAGAGGCAA AGTCAGCAGA GTTTGAGAAG CCTGACCCTA 601 CAAGGAATCC TTCTAGAAAA AGAAAGAAGG AGAAGAAGAA AAAGAAACAT AGAGATAGGA 661 AGTCATCTGA CTCTGACAGC TCAGACTCTG AGAGTGATAC AGGCAAGAGG GCAAGGCACA 721 CATCAAAAGA CAGCAAGGCA GCAAAGAAGA AGAAAAAGAA GAAGAAGCAC AAGAAGAAGC 781 ACAAGGAGTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 841 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 901 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAACTCGG CCCGCCGTGA GCTCTGCTAC 961 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt