Transcript: Mouse NM_001285514.1

Mus musculus CCR4-NOT transcription complex, subunit 6-like (Cnot6l), transcript variant 4, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Cnot6l (231464)
Length:
8570
CDS:
356..1723

Additional Resources:

NCBI RefSeq record:
NM_001285514.1
NBCI Gene record:
Cnot6l (231464)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001285514.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000306053 ATGCTACCAGGCAGCTATATG pLKO_005 657 CDS 100% 13.200 18.480 N Cnot6l n/a
2 TRCN0000306054 GAGTAGCTGACAACCATAAAG pLKO_005 1335 CDS 100% 13.200 18.480 N Cnot6l n/a
3 TRCN0000096568 GTGGAAACAGAGCAATACTTT pLKO.1 776 CDS 100% 5.625 4.500 N Cnot6l n/a
4 TRCN0000325834 GTGGAAACAGAGCAATACTTT pLKO_005 776 CDS 100% 5.625 4.500 N Cnot6l n/a
5 TRCN0000096565 CCTGGGCATTAAACTGGGAAT pLKO.1 690 CDS 100% 4.050 3.240 N Cnot6l n/a
6 TRCN0000311452 CTCGCATTCCACCTGATATTG pLKO_005 261 5UTR 100% 13.200 9.240 N Cnot6l n/a
7 TRCN0000096566 GCAGACAAACAGCTGCTTATA pLKO.1 1100 CDS 100% 13.200 9.240 N Cnot6l n/a
8 TRCN0000230550 TGATATTGCCAAGCTTCATAA pLKO_005 274 5UTR 100% 13.200 9.240 N CNOT6L n/a
9 TRCN0000306120 TTGTGCATACTGATATCATTT pLKO_005 1870 3UTR 100% 13.200 9.240 N Cnot6l n/a
10 TRCN0000052048 CCCAGAGTATTCTGATGTGAA pLKO.1 1147 CDS 100% 4.950 3.465 N CNOT6L n/a
11 TRCN0000096567 CCTTATACCAATTACACCTTT pLKO.1 1481 CDS 100% 4.950 3.465 N Cnot6l n/a
12 TRCN0000096564 CCTTTCACTATGTGTTTGCTA pLKO.1 1834 3UTR 100% 3.000 2.100 N Cnot6l n/a
13 TRCN0000052050 GCAGAAGCATACAGTGGAATT pLKO.1 940 CDS 100% 0.000 0.000 N CNOT6L n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001285514.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.