Transcript: Mouse NM_001285983.1

Mus musculus BTG3 associated nuclear protein (Banp), transcript variant 4, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Banp (53325)
Length:
5372
CDS:
227..1747

Additional Resources:

NCBI RefSeq record:
NM_001285983.1
NBCI Gene record:
Banp (53325)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001285983.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000084821 ACTCTATTAACCAGACGATAT pLKO.1 399 CDS 100% 10.800 15.120 N Banp n/a
2 TRCN0000301965 ACTCTATTAACCAGACGATAT pLKO_005 399 CDS 100% 10.800 15.120 N Banp n/a
3 TRCN0000084820 CCAGACGATATGTTTGCGGTT pLKO.1 409 CDS 100% 2.160 3.024 N Banp n/a
4 TRCN0000304582 ACAGACAAGAACTACGATATT pLKO_005 1976 3UTR 100% 13.200 9.240 N Banp n/a
5 TRCN0000304544 CCAGCGACTAGAGATCAATTG pLKO_005 349 CDS 100% 10.800 7.560 N Banp n/a
6 TRCN0000084819 GCCTGCTGGAAATGAAATGAT pLKO.1 1507 CDS 100% 5.625 3.938 N Banp n/a
7 TRCN0000301899 GCCTGCTGGAAATGAAATGAT pLKO_005 1507 CDS 100% 5.625 3.938 N Banp n/a
8 TRCN0000084822 CGATGAGAATAACCCTGAGAT pLKO.1 793 CDS 100% 4.950 3.465 N Banp n/a
9 TRCN0000301901 CGATGAGAATAACCCTGAGAT pLKO_005 793 CDS 100% 4.950 3.465 N Banp n/a
10 TRCN0000084818 CTCTCTTGCTTCAGCAAGCAA pLKO.1 1811 3UTR 100% 0.300 0.210 N Banp n/a
11 TRCN0000015008 CCAACCAACCAACCAACCAAA pLKO.1 2080 3UTR 100% 4.950 2.475 Y HMBOX1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001285983.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08437 pDONR223 100% 79.3% 87.2% None (many diffs) n/a
2 ccsbBroad304_08437 pLX_304 0% 79.3% 87.2% V5 (many diffs) n/a
3 TRCN0000479214 AAACTCTGCCCGCTTAAGGGGGTG pLX_317 21.9% 79.3% 87.2% V5 (many diffs) n/a
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