Transcript: Human NM_001286048.2

Homo sapiens RNA binding motif protein 7 (RBM7), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
RBM7 (10179)
Length:
3359
CDS:
119..559

Additional Resources:

NCBI RefSeq record:
NM_001286048.2
NBCI Gene record:
RBM7 (10179)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001286048.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000074528 GCCCTTTGACTAAGTTGATAT pLKO.1 600 3UTR 100% 13.200 18.480 N RBM7 n/a
2 TRCN0000286690 GCCCTTTGACTAAGTTGATAT pLKO_005 600 3UTR 100% 13.200 18.480 N RBM7 n/a
3 TRCN0000074531 CCCTACCTAGCAGATAGACAT pLKO.1 374 CDS 100% 4.950 6.930 N RBM7 n/a
4 TRCN0000074532 CCTACCTAGCAGATAGACATT pLKO.1 375 CDS 100% 4.950 6.930 N RBM7 n/a
5 TRCN0000286691 CCTACCTAGCAGATAGACATT pLKO_005 375 CDS 100% 4.950 6.930 N RBM7 n/a
6 TRCN0000074529 GCCATGACTATGATAACAGAA pLKO.1 495 CDS 100% 4.950 6.930 N RBM7 n/a
7 TRCN0000286689 GCCATGACTATGATAACAGAA pLKO_005 495 CDS 100% 4.950 6.930 N RBM7 n/a
8 TRCN0000074530 CGAAAGGACTATGGATAACAT pLKO.1 109 5UTR 100% 5.625 4.500 N RBM7 n/a
9 TRCN0000294039 CTCGACACTAACACATGTTAA pLKO_005 549 CDS 100% 13.200 9.240 N RBM7 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001286048.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02342 pDONR223 100% 54.8% 54.8% None 0_1ins360 n/a
2 ccsbBroad304_02342 pLX_304 0% 54.8% 54.8% V5 0_1ins360 n/a
3 TRCN0000477733 GTAAGCTAGAACCTTCTCAAGCCA pLX_317 60.7% 54.8% 54.8% V5 0_1ins360 n/a
Download CSV