Transcript: Human NM_001287242.2

Homo sapiens Rho GTPase activating protein 6 (ARHGAP6), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-07-10
Taxon:
Homo sapiens (human)
Gene:
ARHGAP6 (395)
Length:
3927
CDS:
224..2608

Additional Resources:

NCBI RefSeq record:
NM_001287242.2
NBCI Gene record:
ARHGAP6 (395)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001287242.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000380488 GCGAATGACAGGGCCTATAAA pLKO_005 548 CDS 100% 15.000 21.000 N ARHGAP6 n/a
2 TRCN0000379888 GCACCTTGCAGCTCCTCATAT pLKO_005 1188 CDS 100% 13.200 9.240 N ARHGAP6 n/a
3 TRCN0000380269 TCACCGATCTTGATGACAATC pLKO_005 783 CDS 100% 10.800 7.560 N ARHGAP6 n/a
4 TRCN0000047161 CCAATCATCAAGCCCTGACAT pLKO.1 1582 CDS 100% 4.950 3.465 N ARHGAP6 n/a
5 TRCN0000047160 CCATTCCCAAAGATGGACAAA pLKO.1 420 CDS 100% 4.950 3.465 N ARHGAP6 n/a
6 TRCN0000047159 GCCGATGACAACATCAGCAAA pLKO.1 1280 CDS 100% 4.950 3.465 N ARHGAP6 n/a
7 TRCN0000047162 CGTCGTCAAAGTCAAGGGAAA pLKO.1 1812 CDS 100% 4.050 2.835 N ARHGAP6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001287242.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05848 pDONR223 100% 81% 79.6% None (many diffs) n/a
2 ccsbBroad304_05848 pLX_304 0% 81% 79.6% V5 (many diffs) n/a
3 TRCN0000476350 CACCAACCGCACCCAGCTGTATTC pLX_317 11.4% 81% 79.6% V5 (many diffs) n/a
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