Construct: ORF ccsbBroad304_09077

Construct Description:

• Construct Type: ORF
• Other Identifiers: ORF004259.1_s304c1, BRDN0000399631
• Derived from: ccsbBroadEn_09077
• DNA Barcode: None
• Epitope Tag: V5
• Notes: No stop codon in insert

Originally Annotated References:

• Gene: CAB39L (81617)

Vector Information:

• Vector Backbone: pLX_304
• Pol II Cassette 1: PGK-BlastR
• Pol II Cassette 2: CMV-ccsbBroad304_09077
• Selection Marker: BlastR
• Visible Reporter: n/a
• Epitope Tag: V5

Current transcripts matched by this ORF:

	Taxon	Gene	Symbol	Description	Transcript	Nuc. Match %	Prot. Match %	Match Diffs
1	human	81617	CAB39L	calcium binding protein 39 ...	NM_001079670.3	99.7%	99.7%	186A>G;237A>G;278G>A
2	human	81617	CAB39L	calcium binding protein 39 ...	NM_001287337.2	99.7%	99.7%	186A>G;237A>G;278G>A
3	human	81617	CAB39L	calcium binding protein 39 ...	NM_001287338.1	99.7%	99.7%	186A>G;237A>G;278G>A
4	human	81617	CAB39L	calcium binding protein 39 ...	NM_001287339.1	99.7%	99.7%	186A>G;237A>G;278G>A
5	human	81617	CAB39L	calcium binding protein 39 ...	NM_030925.4	99.7%	99.7%	186A>G;237A>G;278G>A
6	human	81617	CAB39L	calcium binding protein 39 ...	XM_011535254.3	99.7%	99.7%	186A>G;237A>G;278G>A
7	human	81617	CAB39L	calcium binding protein 39 ...	XM_011535255.3	99.7%	99.7%	186A>G;237A>G;278G>A
8	human	81617	CAB39L	calcium binding protein 39 ...	XM_011535256.3	99.7%	99.7%	186A>G;237A>G;278G>A
9	human	81617	CAB39L	calcium binding protein 39 ...	XM_017020785.2	99.7%	99.7%	186A>G;237A>G;278G>A
10	human	81617	CAB39L	calcium binding protein 39 ...	XM_017020786.2	99.7%	99.7%	186A>G;237A>G;278G>A
11	human	81617	CAB39L	calcium binding protein 39 ...	XM_017020787.2	99.7%	99.7%	186A>G;237A>G;278G>A
12	human	81617	CAB39L	calcium binding protein 39 ...	XM_017020788.2	99.7%	99.7%	186A>G;237A>G;278G>A
13	mouse	69008	Cab39l	calcium binding protein 39-...	NM_026908.3	90.5%	98.2%	(many diffs)
14	mouse	69008	Cab39l	calcium binding protein 39-...	XM_006519494.2	90.5%	98.2%	(many diffs)
15	mouse	69008	Cab39l	calcium binding protein 39-...	XM_006519495.2	90.5%	98.2%	(many diffs)
16	mouse	69008	Cab39l	calcium binding protein 39-...	XM_017316176.1	90.5%	98.2%	(many diffs)
17	mouse	69008	Cab39l	calcium binding protein 39-...	XM_017316177.1	84.9%	92.2%	(many diffs)

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:

66

ORF end:

1077

ORF length:

1011

Sequence:

1	ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61	ctggcatgaa aaaaatgcct ttgtttagta aatcacacaa aaatccagca gaaattgtga
121	aaatcctgaa agacaatttg gccattttgg aaaagcaaga caaaaagaca gacaaggctt
181	cagaagaagt gtctaaatca ctgcaagcaa tgaaagaaat tctgtgtggt acaaacgaga
241	aagaaccccc gacagaagca gtggctcagc tagcacaaga actctacagc agtggcctgc
301	tggtgacact gatagctgac ctgcagctga tagactttga ggaaaaaaaa gatgtgaccc
361	agatatttaa caacatcttg agaagacaga taggcactcg gagtcctact gtggagtata
421	ttagtgctca tcctcatatc ctgtttatgc tcctcaaagg atatgaagcc ccacagattg
481	ccttacgttg tgggattatg ctgagagaat gtattcgaca tgaaccactt gccaaaatca
541	tcctcttttc taatcaattc agagatttct ttaagtacgt ggagttgtca acatttgata
601	ttgcttcaga tgcctttgct actttcaagg atttactaac cagacataaa gtgttggtag
661	cagacttctt agaacaaaat tacgacacta tttttgaaga ctatgagaaa ttgcttcagt
721	ctgagaatta tgttactaag agacagtctt taaagctgct aggggagctg atcctggacc
781	gtcacaactt tgccatcatg acaaagtata tcagcaagcc ggagaacctg aaactcatga
841	tgaacctcct tcgggataaa agtcccaaca tccagtttga agcctttcat gtttttaagg
901	tgtttgtggc cagtcctcac aaaacacagc ctattgtgga gatcctgtta aaaaatcagc
961	ccaaactcat tgagtttctg agcagcttcc aaaaagaaag gacggatgat gagcagttcg
1021	ctgacgagaa gaactacttg attaaacaga tccgagactt gaagaaaacg gccccttgcc
1081	caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
1141	ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
1201	tta

Download FASTA