Transcript: Human NM_001288786.2

Homo sapiens target of myb1 like 2 membrane trafficking protein (TOM1L2), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
TOM1L2 (146691)
Length:
5663
CDS:
88..1539

Additional Resources:

NCBI RefSeq record:
NM_001288786.2
NBCI Gene record:
TOM1L2 (146691)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001288786.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000065327 CGTGACGGCTTTGACATGTTT pLKO.1 1069 CDS 100% 5.625 7.875 N TOM1L2 n/a
2 TRCN0000065323 CGAGATTTCATCGACAGTGTT pLKO.1 361 CDS 100% 4.950 6.930 N TOM1L2 n/a
3 TRCN0000065324 CCATCTGTCATGGACGACATT pLKO.1 1309 CDS 100% 4.950 3.465 N TOM1L2 n/a
4 TRCN0000065325 CCCACCATTGTACAGGACAAA pLKO.1 415 CDS 100% 4.950 3.465 N TOM1L2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001288786.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04992 pDONR223 100% 75.3% 75.3% None 217_366del;500_501ins159;1119_1205del n/a
2 ccsbBroad304_04992 pLX_304 0% 75.3% 75.3% V5 217_366del;500_501ins159;1119_1205del n/a
3 TRCN0000477805 TACATTACAGCGACGATCTTTAAA pLX_317 22.4% 75.3% 75.3% V5 217_366del;500_501ins159;1119_1205del n/a
Download CSV