Transcript: Mouse NM_001289924.1

Mus musculus RIKEN cDNA 2010111I01 gene (2010111I01Rik), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
2010111I01Rik (72061)
Length:
3843
CDS:
269..2740

Additional Resources:

NCBI RefSeq record:
NM_001289924.1
NBCI Gene record:
2010111I01Rik (72061)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001289924.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000031135 GCAGGTGTTAAGACCCAACAA pLKO.1 1924 CDS 100% 4.950 6.930 N 2010111I01Rik n/a
2 TRCN0000341372 AGCGGACTTGAGGTATGATAA pLKO_005 1381 CDS 100% 13.200 10.560 N 2010111I01Rik n/a
3 TRCN0000031136 GCCATCAGAATATGGTATAAA pLKO.1 995 CDS 100% 15.000 10.500 N 2010111I01Rik n/a
4 TRCN0000031134 GCCACGCATTTGGAAGATATA pLKO.1 1787 CDS 100% 13.200 9.240 N 2010111I01Rik n/a
5 TRCN0000341316 TCATGCAGGTTCATTACTTAA pLKO_005 2016 CDS 100% 13.200 9.240 N 2010111I01Rik n/a
6 TRCN0000341309 TGCCATCAGAATATGGTATAA pLKO_005 994 CDS 100% 13.200 9.240 N 2010111I01Rik n/a
7 TRCN0000031137 CGGTTCCTAACCAGAACACTT pLKO.1 2054 CDS 100% 4.950 3.465 N 2010111I01Rik n/a
8 TRCN0000031138 CCACATGCTTGTGAAGCACTA pLKO.1 325 CDS 100% 4.050 2.835 N 2010111I01Rik n/a
9 TRCN0000341371 GATGGTGTGAACTGGTTATTA pLKO_005 2523 CDS 100% 15.000 9.000 N 2010111I01Rik n/a
10 TRCN0000073862 CTGCTGTGATTTATCTGTGTT pLKO.1 709 CDS 100% 4.950 2.970 N AOPEP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001289924.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.