Transcript: Human NM_001292049.1

Homo sapiens SH3 and cysteine rich domain (STAC), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-01-13
Taxon:
Homo sapiens (human)
Gene:
STAC (6769)
Length:
2915
CDS:
158..1183

Additional Resources:

NCBI RefSeq record:
NM_001292049.1
NBCI Gene record:
STAC (6769)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001292049.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000138789 GACCAAGAGTTTACGGAGCAA pLKO.1 301 CDS 100% 2.640 3.696 N STAC n/a
2 TRCN0000138733 CCAGCCAACTTTGTTCAGAGA pLKO.1 977 CDS 100% 2.640 2.112 N STAC n/a
3 TRCN0000105762 CCCATTACAGATGAACACCTA pLKO.1 823 CDS 100% 2.640 2.112 N Stac n/a
4 TRCN0000416312 ATCCATGTAGCTAAGTATTAT pLKO_005 1559 3UTR 100% 15.000 10.500 N STAC n/a
5 TRCN0000427649 AGATCCAGCGAAGAACATAAA pLKO_005 778 CDS 100% 13.200 9.240 N STAC n/a
6 TRCN0000431380 ATGTTGCCTTGTACAAATTTG pLKO_005 843 CDS 100% 13.200 9.240 N STAC n/a
7 TRCN0000137346 GCAGGACATGAGACATAGATA pLKO.1 1906 3UTR 100% 5.625 3.938 N STAC n/a
8 TRCN0000138237 CAGGAATCCAAGCTCCAGAAA pLKO.1 257 CDS 100% 4.950 3.465 N STAC n/a
9 TRCN0000133742 CCAGGAGACATAATTACTCTT pLKO.1 896 CDS 100% 4.950 3.465 N STAC n/a
10 TRCN0000138152 CCACTTTCTGTGATGTCTGCA pLKO.1 510 CDS 100% 2.640 1.848 N STAC n/a
11 TRCN0000420702 ATCCAAGCTCCAGAAACTAAA pLKO_005 262 CDS 100% 13.200 7.920 N Stac n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001292049.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07007 pDONR223 100% 84.7% 84.5% None 333G>T;387_388ins183 n/a
2 ccsbBroad304_07007 pLX_304 0% 84.7% 84.5% V5 333G>T;387_388ins183 n/a
3 TRCN0000492333 ACCAGCCGCGCTTCTGCTGAAATT pLX_317 34.9% 84.7% 84.5% V5 333G>T;387_388ins183 n/a
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