Transcript: Human NM_001293079.1

Homo sapiens chimerin 2 (CHN2), transcript variant 12, mRNA.

Source:
NCBI, updated 2019-08-05
Taxon:
Homo sapiens (human)
Gene:
CHN2 (1124)
Length:
2771
CDS:
400..993

Additional Resources:

NCBI RefSeq record:
NM_001293079.1
NBCI Gene record:
CHN2 (1124)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001293079.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000047742 GCATTCGGGAAATTGAAGCAA pLKO.1 881 CDS 100% 3.000 4.200 N CHN2 n/a
2 TRCN0000047741 CGTACACAAACAGTGTTCCAA pLKO.1 744 CDS 100% 3.000 2.100 N CHN2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001293079.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05996 pDONR223 100% 38.5% 30.4% None (many diffs) n/a
2 ccsbBroad304_05996 pLX_304 0% 38.5% 30.4% V5 (many diffs) n/a
3 TRCN0000477804 GCCGCGAGTCAAACACCACACCAG pLX_317 34% 38.5% 30.4% V5 (many diffs) n/a
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