Transcript: Human NM_001293205.1

Homo sapiens major vault protein (MVP), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
MVP (9961)
Length:
2587
CDS:
36..2519

Additional Resources:

NCBI RefSeq record:
NM_001293205.1
NBCI Gene record:
MVP (9961)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001293205.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000149499 GTCACTTTCGATGACTTCCAT pLKO.1 1593 CDS 100% 3.000 4.200 N MVP n/a
2 TRCN0000180268 CTTTGAGGTGAATGACCGGAA pLKO.1 1475 CDS 100% 2.160 3.024 N MVP n/a
3 TRCN0000150124 CACTTTCGATGACTTCCATAA pLKO.1 1595 CDS 100% 10.800 8.640 N MVP n/a
4 TRCN0000297936 CACTTTCGATGACTTCCATAA pLKO_005 1595 CDS 100% 10.800 8.640 N MVP n/a
5 TRCN0000148563 CCCATACCACTATATCCATGT pLKO.1 68 CDS 100% 4.050 2.835 N MVP n/a
6 TRCN0000281179 CCCATACCACTATATCCATGT pLKO_005 68 CDS 100% 4.050 2.835 N MVP n/a
7 TRCN0000180269 CCCATCAACCTCTTCAACACA pLKO.1 2349 CDS 100% 3.000 2.100 N MVP n/a
8 TRCN0000281108 CCCATCAACCTCTTCAACACA pLKO_005 2349 CDS 100% 3.000 2.100 N MVP n/a
9 TRCN0000180721 GTGCCAGACTTTGTAGGTGAT pLKO.1 1527 CDS 100% 4.050 2.430 N MVP n/a
10 TRCN0000281042 GTGCCAGACTTTGTAGGTGAT pLKO_005 1527 CDS 100% 4.050 2.430 N MVP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001293205.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02276 pDONR223 100% 92.6% 92.6% None 1435_1436ins198 n/a
2 ccsbBroad304_02276 pLX_304 0% 92.6% 92.6% V5 1435_1436ins198 n/a
3 TRCN0000473574 ACCCATGACGATAAGAGAGACGCG pLX_317 18.4% 92.6% 92.6% V5 1435_1436ins198 n/a
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