Transcript: Human NM_001308.3

Homo sapiens carboxypeptidase N subunit 1 (CPN1), mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
CPN1 (1369)
Length:
1855
CDS:
245..1621

Additional Resources:

NCBI RefSeq record:
NM_001308.3
NBCI Gene record:
CPN1 (1369)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001308.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000047118 CCCTGATCTCAATACCTATAT pLKO.1 733 CDS 100% 13.200 18.480 N CPN1 n/a
2 TRCN0000222010 GTATTCTCTCAGCAAGGGAAT pLKO.1 1099 CDS 100% 4.050 5.670 N Cpn1 n/a
3 TRCN0000312340 GTATTCTCTCAGCAAGGGAAT pLKO_005 1099 CDS 100% 4.050 5.670 N Cpn1 n/a
4 TRCN0000047122 GTTGGTTAACTTCCACCTCAA pLKO.1 1471 CDS 100% 4.050 5.670 N CPN1 n/a
5 TRCN0000047121 GCTATGATGATCTTGTGCGGA pLKO.1 324 CDS 100% 0.660 0.924 N CPN1 n/a
6 TRCN0000371840 ATCTCGCCAATGCTGTCATTT pLKO_005 1302 CDS 100% 13.200 9.240 N CPN1 n/a
7 TRCN0000371899 TGGAACCAGAGGTCAAGTATG pLKO_005 468 CDS 100% 10.800 7.560 N CPN1 n/a
8 TRCN0000047119 GTGCTTGATGAGAATTACAAT pLKO.1 1280 CDS 100% 5.625 3.938 N CPN1 n/a
9 TRCN0000047120 CCAGGTATCTACACTGTTAGT pLKO.1 1388 CDS 100% 4.950 3.465 N CPN1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001308.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06032 pDONR223 100% 99.9% 100% None 846G>A n/a
2 ccsbBroad304_06032 pLX_304 0% 99.9% 100% V5 846G>A n/a
Download CSV