Transcript: Human NM_001308320.2

Homo sapiens poly(ADP-ribose) polymerase family member 15 (PARP15), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
PARP15 (165631)
Length:
4417
CDS:
19..1470

Additional Resources:

NCBI RefSeq record:
NM_001308320.2
NBCI Gene record:
PARP15 (165631)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001308320.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423430 TTGCTGTGGATGCCAGTTATT pLKO_005 1208 CDS 100% 13.200 18.480 N PARP15 n/a
2 TRCN0000414290 GTACGTTGTGCGAGTACTTAC pLKO_005 1278 CDS 100% 10.800 15.120 N PARP15 n/a
3 TRCN0000053005 GCCAGGACAATCAGAATATAA pLKO.1 933 CDS 100% 15.000 10.500 N PARP15 n/a
4 TRCN0000053003 CCCAGAATATCTCATAACTTT pLKO.1 1440 CDS 100% 5.625 3.938 N PARP15 n/a
5 TRCN0000053006 CCACCCAAGAATCCTCACAAT pLKO.1 1339 CDS 100% 4.950 3.465 N PARP15 n/a
6 TRCN0000053004 GCCACTGAACAGGTAGATGTT pLKO.1 580 CDS 100% 4.950 3.465 N PARP15 n/a
7 TRCN0000148774 CCATGTGTTCTCATTGTTCAA pLKO.1 3370 3UTR 100% 4.950 2.475 Y GLIPR1L2 n/a
8 TRCN0000162188 CCATGTGTTCTCATTGTTCAA pLKO.1 3370 3UTR 100% 4.950 2.475 Y SPC25 n/a
9 TRCN0000166463 CCTGTGTCCATGTGTTCTCAT pLKO.1 3363 3UTR 100% 4.950 2.475 Y SPC25 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001308320.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05135 pDONR223 100% 62.2% 53.6% None (many diffs) n/a
2 ccsbBroad304_05135 pLX_304 0% 62.2% 53.6% V5 (many diffs) n/a
3 TRCN0000480071 GCCGTGTGTAAGATTTACCGACAC pLX_317 17% 62.2% 53.6% V5 (many diffs) n/a
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