Transcript: Mouse NM_001310583.1

Mus musculus proteasome (prosome, macropain) subunit, alpha type 6 (Psma6), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Psma6 (26443)
Length:
936
CDS:
88..771

Additional Resources:

NCBI RefSeq record:
NM_001310583.1
NBCI Gene record:
Psma6 (26443)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001310583.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000032043 GCACGCTATGAGGCAGCTAAT pLKO.1 310 CDS 100% 10.800 15.120 N Psma6 n/a
2 TRCN0000323820 GCACGCTATGAGGCAGCTAAT pLKO_005 310 CDS 100% 10.800 15.120 N Psma6 n/a
3 TRCN0000032040 GCCACTCGGTTGTTGTATGAT pLKO.1 426 CDS 100% 5.625 7.875 N Psma6 n/a
4 TRCN0000323887 GCCACTCGGTTGTTGTATGAT pLKO_005 426 CDS 100% 5.625 7.875 N Psma6 n/a
5 TRCN0000022370 CAGGTACAGAGGGCACGCTAT pLKO.1 298 CDS 100% 1.350 1.890 N PSMA6 n/a
6 TRCN0000338341 CAGGTACAGAGGGCACGCTAT pLKO_005 298 CDS 100% 1.350 1.890 N PSMA6 n/a
7 TRCN0000032042 CTGCAATTACATGCCTGTCTA pLKO.1 620 CDS 100% 4.950 3.465 N Psma6 n/a
8 TRCN0000323822 CTGCAATTACATGCCTGTCTA pLKO_005 620 CDS 100% 4.950 3.465 N Psma6 n/a
9 TRCN0000032039 GCAGGTTACTACTGTGGCTTT pLKO.1 499 CDS 100% 4.050 2.835 N Psma6 n/a
10 TRCN0000353820 GCAGGTTACTACTGTGGCTTT pLKO_005 499 CDS 100% 4.050 2.835 N Psma6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001310583.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15543 pDONR223 0% 85.9% 89% None (many diffs) n/a
2 ccsbBroad304_15543 pLX_304 0% 85.9% 89% V5 (many diffs) n/a
3 TRCN0000473425 ACAACTGTGCAGAGGTGGGGGGAT pLX_317 39.9% 85.9% 89% V5 (many diffs) n/a
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