Transcript: Mouse NM_001310670.1

Mus musculus zinc finger protein 111 (Zfp111), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Zfp111 (56707)
Length:
6327
CDS:
70..2175

Additional Resources:

NCBI RefSeq record:
NM_001310670.1
NBCI Gene record:
Zfp111 (56707)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001310670.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000086521 AGGCTCATCAAAGAGTCGAAA pLKO.1 1499 CDS 100% 4.950 6.930 N Zfp111 n/a
2 TRCN0000412898 TCTGGGCTCCAAGTCCATAAG pLKO_005 1993 CDS 100% 10.800 8.640 N Zfp111 n/a
3 TRCN0000086520 CCAAATAAGATGGAGATTGTT pLKO.1 226 CDS 100% 5.625 4.500 N Zfp111 n/a
4 TRCN0000432509 AGTCCAATCAGATGCAATTAG pLKO_005 2381 3UTR 100% 13.200 9.240 N Zfp111 n/a
5 TRCN0000418294 AGTTCTCCTGATCTGACAAAT pLKO_005 442 CDS 100% 13.200 9.240 N Zfp111 n/a
6 TRCN0000431562 CAAGTGGTCTGGCATCTATAG pLKO_005 2538 3UTR 100% 10.800 7.560 N Zfp111 n/a
7 TRCN0000434274 TCAGCTGTATCTCGAACTTTC pLKO_005 977 CDS 100% 10.800 7.560 N Zfp111 n/a
8 TRCN0000086518 CCGGGATCTTTATTTACCAAT pLKO.1 3090 3UTR 100% 4.950 3.465 N Zfp111 n/a
9 TRCN0000086522 GTGCCAGTTCAAGAAAGCATT pLKO.1 658 CDS 100% 4.950 3.465 N Zfp111 n/a
10 TRCN0000235219 ACAGGAGAGAAACCCTATAAA pLKO_005 1435 CDS 100% 15.000 7.500 Y LOC66376 n/a
11 TRCN0000235327 ACAGGAGAGAAACCCTATAAA pLKO_005 1435 CDS 100% 15.000 7.500 Y OTTMUSG00000016228 n/a
12 TRCN0000243738 CAGGAGAGAAACCCTATAAAT pLKO_005 1436 CDS 100% 15.000 7.500 Y Gm14430 n/a
13 TRCN0000239756 ACAGGAGAGAAGCCATATAAG pLKO_005 934 CDS 100% 13.200 6.600 Y Gm11677 n/a
14 TRCN0000284648 ATACAGGAGAGAAACCCTATA pLKO_005 2105 CDS 100% 10.800 5.400 Y Gm14308 n/a
15 TRCN0000164599 CGGGAGAGAAACCCTATGAAT pLKO.1 1772 CDS 100% 5.625 2.813 Y ZNF570 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001310670.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.