Transcript: Mouse NM_001315500.1

Mus musculus myelin protein zero (Mpz), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-18
Taxon:
Mus musculus (mouse)
Gene:
Mpz (17528)
Length:
1916
CDS:
65..1003

Additional Resources:

NCBI RefSeq record:
NM_001315500.1
NBCI Gene record:
Mpz (17528)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001315500.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000429200 AGTCTCGCAAGGATAAGAAAT pLKO_005 789 CDS 100% 13.200 18.480 N Mpz n/a
2 TRCN0000083729 GCCATTTCGATCTTCCACTAT pLKO.1 290 CDS 100% 4.950 6.930 N MPZ n/a
3 TRCN0000433435 ATGAGATGTAAAGTTTCATTC pLKO_005 1109 3UTR 100% 10.800 8.640 N Mpz n/a
4 TRCN0000090113 CCATCCATTCTTTCGTTTGTT pLKO.1 1485 3UTR 100% 5.625 4.500 N Mpz n/a
5 TRCN0000439532 ACACGGACAGGGAAATCTATG pLKO_005 162 CDS 100% 10.800 7.560 N Mpz n/a
6 TRCN0000438102 TGTACTCCTCCTTCGCCTTTA pLKO_005 1150 3UTR 100% 10.800 7.560 N Mpz n/a
7 TRCN0000083732 GAGTCTCGCAAGGATAAGAAA pLKO.1 788 CDS 100% 5.625 3.938 N MPZ n/a
8 TRCN0000090114 TCACGCTCTATGTCTTTGAAA pLKO.1 489 CDS 100% 5.625 3.938 N Mpz n/a
9 TRCN0000090117 CAACCTAGACTACAGTGACAA pLKO.1 409 CDS 100% 4.950 3.465 N Mpz n/a
10 TRCN0000090115 GCTCTTCTACCTGATTCGGTA pLKO.1 586 CDS 100% 2.640 1.848 N Mpz n/a
11 TRCN0000090116 GCCGAGATGCCATTTCGATTT pLKO.1 282 CDS 100% 10.800 15.120 N Mpz n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001315500.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06594 pDONR223 100% 70.2% 89.9% None (many diffs) n/a
2 ccsbBroad304_06594 pLX_304 0% 70.2% 89.9% V5 (many diffs) n/a
3 TRCN0000472044 GTCAGCCCGTTAATGCGCGCCCTC pLX_317 62.2% 70.2% 89.9% V5 (many diffs) n/a
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