Transcript: Human NM_001316922.1

Homo sapiens trans-golgi network vesicle protein 23 homolog B (TVP23B), transcript variant 5, mRNA.

Source:
NCBI, updated 2018-06-30
Taxon:
Homo sapiens (human)
Gene:
TVP23B (51030)
Length:
1983
CDS:
478..837

Additional Resources:

NCBI RefSeq record:
NM_001316922.1
NBCI Gene record:
TVP23B (51030)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001316922.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000426349 CATAGGTAATGGAGACCTTTG pLKO_005 1153 3UTR 100% 6.000 4.200 N TVP23B n/a
2 TRCN0000419796 TCAGTGCAATCATCGTCTATC pLKO_005 433 5UTR 100% 10.800 6.480 N TVP23B n/a
3 TRCN0000150156 GAGTCCTCTCAAGAGAATAAA pLKO.1 550 CDS 100% 15.000 7.500 Y TVP23B n/a
4 TRCN0000413596 TACGTTGGTGGAATCACATTG pLKO_005 488 CDS 100% 10.800 5.400 Y TVP23B n/a
5 TRCN0000147919 GACGACTAATAGACCAAGAAA pLKO.1 362 5UTR 100% 5.625 2.813 Y TVP23B n/a
6 TRCN0000149371 GTTTCACTGTTTGATGCGGAA pLKO.1 336 5UTR 100% 2.160 1.080 Y TVP23B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001316922.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03181 pDONR223 100% 58% 58% None 0_1ins258 n/a
2 TRCN0000476923 CCCGGCCTAACCAGTGAGCTAGGA pLX_317 28.6% 58% 58% V5 0_1ins258 n/a
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