Transcript: Human NM_001317940.2

Homo sapiens basonuclin 2 (BNC2), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
BNC2 (54796)
Length:
12588
CDS:
88..3102

Additional Resources:

NCBI RefSeq record:
NM_001317940.2
NBCI Gene record:
BNC2 (54796)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001317940.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000336904 CCATAGTCAGTGTGCGCTTAT pLKO_005 3161 3UTR 100% 10.800 15.120 N BNC2 n/a
2 TRCN0000108178 CGTAAACTGTTGACCAAAGAA pLKO.1 2467 CDS 100% 5.625 7.875 N BNC2 n/a
3 TRCN0000327841 CGTAAACTGTTGACCAAAGAA pLKO_005 2467 CDS 100% 5.625 7.875 N BNC2 n/a
4 TRCN0000108175 GCCGAATGTTATTAGAATCAA pLKO.1 4213 3UTR 100% 5.625 7.875 N BNC2 n/a
5 TRCN0000336902 CTCCCTAGCCAGCTAGTATTT pLKO_005 1462 CDS 100% 13.200 10.560 N BNC2 n/a
6 TRCN0000108177 CCCTGTCATAGCAAGTACAAA pLKO.1 1359 CDS 100% 5.625 4.500 N BNC2 n/a
7 TRCN0000108179 CCCAGCCTTTCAACTCAGAAT pLKO.1 865 CDS 100% 4.950 3.465 N BNC2 n/a
8 TRCN0000327840 CCCAGCCTTTCAACTCAGAAT pLKO_005 865 CDS 100% 4.950 3.465 N BNC2 n/a
9 TRCN0000095489 GCATGGCAGATTCACCTGTAA pLKO.1 3608 3UTR 100% 4.950 3.465 N Bnc2 n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 3401 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001317940.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.