Transcript: Human NM_001318763.2

Homo sapiens alpha tubulin acetyltransferase 1 (ATAT1), transcript variant 7, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
ATAT1 (79969)
Length:
2648
CDS:
13..984

Additional Resources:

NCBI RefSeq record:
NM_001318763.2
NBCI Gene record:
ATAT1 (79969)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001318763.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000263599 CTGAGGAGAGTCGATACTAAC pLKO_005 1512 3UTR 100% 10.800 15.120 N ATAT1 n/a
2 TRCN0000263600 GCGAGAACTCTTCCAGTATAT pLKO_005 420 CDS 100% 13.200 10.560 N ATAT1 n/a
3 TRCN0000263598 TGGTAGCTAGGTCCCGATATA pLKO_005 2308 3UTR 100% 13.200 10.560 N ATAT1 n/a
4 TRCN0000263597 GATGATCGTGAGGCTCATAAT pLKO_005 334 CDS 100% 13.200 9.240 N ATAT1 n/a
5 TRCN0000167761 GTGAACAACTTTGTGATCTTT pLKO.1 550 CDS 100% 5.625 3.938 N ATAT1 n/a
6 TRCN0000194424 CCCACAGGTGAACAACTTTGT pLKO.1 543 CDS 100% 4.950 3.465 N Atat1 n/a
7 TRCN0000167971 CCTGGCTTTAATGTGAGAGTT pLKO.1 1194 3UTR 100% 4.950 3.465 N ATAT1 n/a
8 TRCN0000282709 CAGCAAATTATGACCATTATA pLKO_005 133 CDS 100% 15.000 9.000 N ATAT1 n/a
9 TRCN0000172948 GAAGGCTTCTTTGCCCATCAA pLKO.1 571 CDS 100% 4.950 2.970 N ATAT1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001318763.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10521 pDONR223 100% 54.9% 53.2% None (many diffs) n/a
2 ccsbBroad304_10521 pLX_304 0% 54.9% 53.2% V5 (many diffs) n/a
3 TRCN0000466770 CACCAGTATCGGGACTCGTTCTGC pLX_317 71.4% 54.9% 53.2% V5 (many diffs) n/a
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