Transcript: Human NM_001320810.1

Homo sapiens catenin alpha 2 (CTNNA2), transcript variant 7, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
CTNNA2 (1496)
Length:
3033
CDS:
268..2025

Additional Resources:

NCBI RefSeq record:
NM_001320810.1
NBCI Gene record:
CTNNA2 (1496)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001320810.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000435394 GTTCGCATTGGCGCAATATTT pLKO_005 2284 3UTR 100% 15.000 21.000 N CTNNA2 n/a
2 TRCN0000421543 TGTACTAGCCAATACGCTTAA pLKO_005 2464 3UTR 100% 10.800 15.120 N CTNNA2 n/a
3 TRCN0000412374 TAAGATGAGATGAGATCAATA pLKO_005 2164 3UTR 100% 13.200 9.240 N CTNNA2 n/a
4 TRCN0000148903 CCAGAAGAACTAGAGGATGAT pLKO.1 1060 CDS 100% 4.950 3.465 N CTNNA2 n/a
5 TRCN0000147992 GAGGTAGATTGTGATGTCATA pLKO.1 1627 CDS 100% 4.950 3.465 N CTNNA2 n/a
6 TRCN0000150270 GAAACCAATGTTCCTTTGCTA pLKO.1 343 CDS 100% 3.000 2.100 N CTNNA2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001320810.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06063 pDONR223 100% 56.3% 56.3% None 0_1ins1104;828G>A;1326_1469del n/a
2 ccsbBroad304_06063 pLX_304 0% 56.3% 56.3% V5 0_1ins1104;828G>A;1326_1469del n/a
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