Construct: ORF ccsbBroadEn_06063
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008500.1_s300c1, BRDN0000397291
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CTNNA2 (1496)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1496 | CTNNA2 | catenin alpha 2 | NM_004389.3 | 99.9% | 100% | 1932G>A |
| 2 | human | 1496 | CTNNA2 | catenin alpha 2 | XM_017003403.2 | 99.9% | 100% | 1932G>A |
| 3 | human | 1496 | CTNNA2 | catenin alpha 2 | XM_024452716.1 | 99.9% | 100% | 1932G>A |
| 4 | human | 1496 | CTNNA2 | catenin alpha 2 | NM_001282598.1 | 96.3% | 96.3% | 1_102del;2034G>A |
| 5 | human | 1496 | CTNNA2 | catenin alpha 2 | NM_001164883.1 | 94.9% | 95% | 1932G>A;2294_2295ins135 |
| 6 | human | 1496 | CTNNA2 | catenin alpha 2 | NM_001282597.2 | 94.9% | 94.9% | 1932G>A;2430_2573del |
| 7 | human | 1496 | CTNNA2 | catenin alpha 2 | XM_011532555.2 | 94.9% | 94.9% | 1932G>A;2430_2573del |
| 8 | human | 1496 | CTNNA2 | catenin alpha 2 | XM_011532556.2 | 94.9% | 94.9% | 1932G>A;2430_2573del |
| 9 | human | 1496 | CTNNA2 | catenin alpha 2 | XM_024452714.1 | 94.9% | 94.9% | 1932G>A;2430_2573del |
| 10 | human | 1496 | CTNNA2 | catenin alpha 2 | XM_024452715.1 | 94.9% | 94.9% | 1932G>A;2430_2573del |
| 11 | human | 1496 | CTNNA2 | catenin alpha 2 | XM_017003405.2 | 92.9% | 89.6% | (many diffs) |
| 12 | human | 1496 | CTNNA2 | catenin alpha 2 | XM_017003404.2 | 91.9% | 89.3% | (many diffs) |
| 13 | human | 1496 | CTNNA2 | catenin alpha 2 | NM_001282599.1 | 62.7% | 60.6% | (many diffs) |
| 14 | human | 1496 | CTNNA2 | catenin alpha 2 | NM_001282600.1 | 59.3% | 59.3% | 0_1ins1104;828G>A |
| 15 | human | 1496 | CTNNA2 | catenin alpha 2 | NM_001320810.1 | 56.3% | 56.3% | 0_1ins1104;828G>A;1326_1469del |
| 16 | human | 1496 | CTNNA2 | catenin alpha 2 | XM_017003406.2 | 54.3% | 54.3% | 0_1ins1104;828G>A;1190_1191ins135 |
| 17 | human | 1496 | CTNNA2 | catenin alpha 2 | XM_011532557.2 | 47.8% | 47.8% | 0_1ins1347;585G>A;1083_1226del |
| 18 | mouse | 12386 | Ctnna2 | catenin (cadherin associate... | NM_145732.2 | 90.3% | 99.8% | (many diffs) |
| 19 | mouse | 12386 | Ctnna2 | catenin (cadherin associate... | XM_017321372.1 | 90.3% | 99.8% | (many diffs) |
| 20 | mouse | 12386 | Ctnna2 | catenin (cadherin associate... | XM_011241194.2 | 89.1% | 98.4% | (many diffs) |
| 21 | mouse | 12386 | Ctnna2 | catenin (cadherin associate... | NM_001109764.1 | 85.8% | 94.8% | (many diffs) |
| 22 | mouse | 12386 | Ctnna2 | catenin (cadherin associate... | NM_009819.2 | 85.8% | 94.8% | (many diffs) |
| 23 | mouse | 12386 | Ctnna2 | catenin (cadherin associate... | XM_017321371.1 | 84.6% | 93.5% | (many diffs) |
| 24 | mouse | 12386 | Ctnna2 | catenin (cadherin associate... | XM_011241195.2 | 78.2% | 85.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2781
- ORF length:
- 2715
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TTCGGCAACT TCACCTATCA TTCTGAAATG GGACCCCAAA AGTTTGGAAA 121 TCCGGACGCT AACAGTGGAA AGGCTGTTGG AGCCACTTGT TACACAGGTG ACTACACTTG 181 TCAACACAAG CAACAAAGGC CCATCTGGTA AAAAGAAAGG GAGGTCAAAG AAAGCCCATG 241 TACTAGCTGC CTCTGTAGAG CAAGCCACTC AGAATTTCCT GGAAAAGGGT GAACAGATCG 301 CTAAGGAGAG TCAAGATCTC AAAGAAGAGT TGGTGGCTGC TGTAGAGGAT GTGCGCAAAC 361 AAGGTGAGAC GATGCGGATC GCCTCCTCCG AGTTTGCAGA TGACCCTTGC TCGTCGGTAA 421 AGCGCGGCAC CATGGTACGG GCGGCAAGGG CTTTGCTCTC CGCGGTGACA CGCTTACTCA 481 TCCTGGCGGA CATGGCAGAT GTCATGAGAC TTTTATCCCA TCTGAAAATT GTGGAAGAGG 541 CCCTGGAAGC TGTCAAAAAT GCTACAAATG AGCAAGACCT TGCAAACCGT TTTAAAGAGT 601 TTGGGAAAGA GATGGTGAAA CTTAACTATG TAGCAGCAAG AAGACAACAG GAGCTGAAGG 661 ATCCTCACTG TCGGGATGAG ATGGCAGCCG CCCGAGGGGC TCTGAAGAAG AATGCCACAA 721 TGCTGTACAC GGCCTCTCAA GCATTTCTCC GCCACCCAGA TGTCGCCGCT ACGAGAGCCA 781 ACCGAGATTA TGTGTTCAAA CAAGTCCAGG AGGCCATCGC CGGCATCTCC AATGCTGCTC 841 AAGCTACCTC GCCCACTGAC GAAGCCAAGG GCCACACGGG CATCGGCGAG CTGGCTGCGG 901 CTCTTAATGA GTTTGACAAT AAGATTATCC TGGACCCCAT GACGTTCAGC GAGGCCAGGT 961 TCCGGCCGTC CCTGGAGGAG AGGCTGGAGA GCATCATCAG CGGCGCAGCG CTGATGGCCG 1021 ACTCCTCCTG CACGCGAGAC GACCGGCGCG AGAGGATCGT GGCGGAGTGC AACGCCGTGC 1081 GGCAGGCGCT CCAGGACCTG CTCAGCGAGT ACATGAATAA TACTGGAAGG AAAGAAAAAG 1141 GAGATCCTCT CAACATTGCG ATTGATAAGA TGACTAAGAA AACAAGAGAT CTAAGGAGAC 1201 AGCTTCGGAA AGCAGTGATG GATCACATAT CTGACTCTTT CCTGGAAACC AATGTTCCTT 1261 TGCTAGTTCT CATTGAGGCT GCAAAGAGCG GAAATGAAAA GGAAGTGAAA GAATATGCCC 1321 AAGTTTTCCG TGAGCATGCC AACAAACTGG TAGAGGTTGC CAATTTGGCC TGTTCCATCT 1381 CCAACAATGA AGAAGGGGTG AAATTAGTTC GGATGGCAGC CACCCAGATT GACAGCCTGT 1441 GTCCCCAGGT CATCAATGCC GCTCTGACAC TGGCTGCCCG GCCACAGAGC AAAGTTGCTC 1501 AGGATAACAT GGACGTCTTC AAAGACCAGT GGGAGAAGCA GGTCCGAGTG TTGACAGAGG 1561 CCGTGGATGA CATCACCTCA GTGGATGACT TCCTCTCTGT CTCAGAAAAT CACATCTTGG 1621 AGGATGTGAA CAAGTGTGTG ATAGCCCTCC AAGAGGGCGA TGTGGACACT CTGGACCGGA 1681 CTGCAGGGGC CATCAGGGGC CGGGCAGCTC GAGTCATACA CATCATCAAT GCTGAGATGG 1741 AGAACTATGA AGCTGGGGTT TATACTGAGA AGGTGTTGGA AGCTACAAAA TTGCTTTCTG 1801 AAACAGTGAT GCCACGCTTC GCTGAACAAG TAGAGGTTGC CATTGAAGCC CTGAGTGCCA 1861 ACGTTCCTCA ACCGTTTGAG GAGAATGAGT TCATCGATGC CTCTCGCCTG GTGTATGATG 1921 GCGTTCGGGA CATCAGAAAG GCTGTGCTGA TGATCAGGAC CCCAGAAGAA CTAGAGGATG 1981 ATTCTGACTT TGAGCAAGAA GATTATGATG TGCGTAGCAG GACAAGTGTT CAGACTGAGG 2041 ATGACCAGCT CATTGCAGGG CAGAGCGCAC GGGCCATCAT GGCGCAACTA CCGCAGGAGG 2101 AGAAGGCAAA AATAGCTGAG CAGGTGGAGA TATTCCATCA AGAGAAAAGC AAGCTGGATG 2161 CAGAAGTGGC CAAATGGGAC GACAGCGGCA ATGATATCAT TGTACTGGCC AAGCAGATGT 2221 GTATGATCAT GATGGAAATG ACAGACTTCA CAAGAGGCAA AGGCCCATTG AAAAATACAT 2281 CTGATGTCAT TAATGCTGCC AAGAAAATTG CCGAAGCAGG TTCTCGAATG GACAAATTAG 2341 CTCGTGCTGT GGCTGATCAG TGTCCTGATT CAGCATGTAA GCAGGATTTA TTAGCCTACC 2401 TTCAACGAAT TGCCTTGTAT TGCCATCAGC TTAATATCTG CAGCAAGGTG AAGGCAGAAG 2461 TGCAGAATCT GGGAGGAGAG CTCATTGTGT CAGGGCTGGA CAGTGCCACA TCGCTTATCC 2521 AGGCAGCTAA AAACCTGATG AATGCTGTTG TCCTCACGGT GAAAGCATCC TATGTGGCCT 2581 CAACCAAATA CCAGAAGGTC TATGGGACAG CAGCTGTCAA CTCACCTGTT GTGTCTTGGA 2641 AGATGAAGGC TCCAGAGAAG AAGCCCCTTG TGAAGAGAGA AAAGCCTGAA GAATTCCAGA 2701 CACGAGTTCG ACGAGGTTCT CAGAAGAAAC ACATTTCGCC TGTACAGGCT TTAAGTGAAT 2761 TCAAAGCAAT GGATTCCTTC TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 2821 attgcttatc aatttgttgc aacgaac