Construct: ORF ccsbBroadEn_06063

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008500.1_s300c1, BRDN0000397291
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CTNNA2 (1496)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1496 CTNNA2 catenin alpha 2 NM_004389.3 99.9% 100% 1932G>A
2 human 1496 CTNNA2 catenin alpha 2 XM_017003403.2 99.9% 100% 1932G>A
3 human 1496 CTNNA2 catenin alpha 2 XM_024452716.1 99.9% 100% 1932G>A
4 human 1496 CTNNA2 catenin alpha 2 NM_001282598.1 96.3% 96.3% 1_102del;2034G>A
5 human 1496 CTNNA2 catenin alpha 2 NM_001164883.1 94.9% 95% 1932G>A;2294_2295ins135
6 human 1496 CTNNA2 catenin alpha 2 NM_001282597.2 94.9% 94.9% 1932G>A;2430_2573del
7 human 1496 CTNNA2 catenin alpha 2 XM_011532555.2 94.9% 94.9% 1932G>A;2430_2573del
8 human 1496 CTNNA2 catenin alpha 2 XM_011532556.2 94.9% 94.9% 1932G>A;2430_2573del
9 human 1496 CTNNA2 catenin alpha 2 XM_024452714.1 94.9% 94.9% 1932G>A;2430_2573del
10 human 1496 CTNNA2 catenin alpha 2 XM_024452715.1 94.9% 94.9% 1932G>A;2430_2573del
11 human 1496 CTNNA2 catenin alpha 2 XM_017003405.2 92.9% 89.6% (many diffs)
12 human 1496 CTNNA2 catenin alpha 2 XM_017003404.2 91.9% 89.3% (many diffs)
13 human 1496 CTNNA2 catenin alpha 2 NM_001282599.1 62.7% 60.6% (many diffs)
14 human 1496 CTNNA2 catenin alpha 2 NM_001282600.1 59.3% 59.3% 0_1ins1104;828G>A
15 human 1496 CTNNA2 catenin alpha 2 NM_001320810.1 56.3% 56.3% 0_1ins1104;828G>A;1326_1469del
16 human 1496 CTNNA2 catenin alpha 2 XM_017003406.2 54.3% 54.3% 0_1ins1104;828G>A;1190_1191ins135
17 human 1496 CTNNA2 catenin alpha 2 XM_011532557.2 47.8% 47.8% 0_1ins1347;585G>A;1083_1226del
18 mouse 12386 Ctnna2 catenin (cadherin associate... NM_145732.2 90.3% 99.8% (many diffs)
19 mouse 12386 Ctnna2 catenin (cadherin associate... XM_017321372.1 90.3% 99.8% (many diffs)
20 mouse 12386 Ctnna2 catenin (cadherin associate... XM_011241194.2 89.1% 98.4% (many diffs)
21 mouse 12386 Ctnna2 catenin (cadherin associate... NM_001109764.1 85.8% 94.8% (many diffs)
22 mouse 12386 Ctnna2 catenin (cadherin associate... NM_009819.2 85.8% 94.8% (many diffs)
23 mouse 12386 Ctnna2 catenin (cadherin associate... XM_017321371.1 84.6% 93.5% (many diffs)
24 mouse 12386 Ctnna2 catenin (cadherin associate... XM_011241195.2 78.2% 85.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2781
ORF length:
2715
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC TTCGGCAACT TCACCTATCA TTCTGAAATG GGACCCCAAA AGTTTGGAAA
121TCCGGACGCT AACAGTGGAA AGGCTGTTGG AGCCACTTGT TACACAGGTG ACTACACTTG
181TCAACACAAG CAACAAAGGC CCATCTGGTA AAAAGAAAGG GAGGTCAAAG AAAGCCCATG
241TACTAGCTGC CTCTGTAGAG CAAGCCACTC AGAATTTCCT GGAAAAGGGT GAACAGATCG
301CTAAGGAGAG TCAAGATCTC AAAGAAGAGT TGGTGGCTGC TGTAGAGGAT GTGCGCAAAC
361AAGGTGAGAC GATGCGGATC GCCTCCTCCG AGTTTGCAGA TGACCCTTGC TCGTCGGTAA
421AGCGCGGCAC CATGGTACGG GCGGCAAGGG CTTTGCTCTC CGCGGTGACA CGCTTACTCA
481TCCTGGCGGA CATGGCAGAT GTCATGAGAC TTTTATCCCA TCTGAAAATT GTGGAAGAGG
541CCCTGGAAGC TGTCAAAAAT GCTACAAATG AGCAAGACCT TGCAAACCGT TTTAAAGAGT
601TTGGGAAAGA GATGGTGAAA CTTAACTATG TAGCAGCAAG AAGACAACAG GAGCTGAAGG
661ATCCTCACTG TCGGGATGAG ATGGCAGCCG CCCGAGGGGC TCTGAAGAAG AATGCCACAA
721TGCTGTACAC GGCCTCTCAA GCATTTCTCC GCCACCCAGA TGTCGCCGCT ACGAGAGCCA
781ACCGAGATTA TGTGTTCAAA CAAGTCCAGG AGGCCATCGC CGGCATCTCC AATGCTGCTC
841AAGCTACCTC GCCCACTGAC GAAGCCAAGG GCCACACGGG CATCGGCGAG CTGGCTGCGG
901CTCTTAATGA GTTTGACAAT AAGATTATCC TGGACCCCAT GACGTTCAGC GAGGCCAGGT
961TCCGGCCGTC CCTGGAGGAG AGGCTGGAGA GCATCATCAG CGGCGCAGCG CTGATGGCCG
1021ACTCCTCCTG CACGCGAGAC GACCGGCGCG AGAGGATCGT GGCGGAGTGC AACGCCGTGC
1081GGCAGGCGCT CCAGGACCTG CTCAGCGAGT ACATGAATAA TACTGGAAGG AAAGAAAAAG
1141GAGATCCTCT CAACATTGCG ATTGATAAGA TGACTAAGAA AACAAGAGAT CTAAGGAGAC
1201AGCTTCGGAA AGCAGTGATG GATCACATAT CTGACTCTTT CCTGGAAACC AATGTTCCTT
1261TGCTAGTTCT CATTGAGGCT GCAAAGAGCG GAAATGAAAA GGAAGTGAAA GAATATGCCC
1321AAGTTTTCCG TGAGCATGCC AACAAACTGG TAGAGGTTGC CAATTTGGCC TGTTCCATCT
1381CCAACAATGA AGAAGGGGTG AAATTAGTTC GGATGGCAGC CACCCAGATT GACAGCCTGT
1441GTCCCCAGGT CATCAATGCC GCTCTGACAC TGGCTGCCCG GCCACAGAGC AAAGTTGCTC
1501AGGATAACAT GGACGTCTTC AAAGACCAGT GGGAGAAGCA GGTCCGAGTG TTGACAGAGG
1561CCGTGGATGA CATCACCTCA GTGGATGACT TCCTCTCTGT CTCAGAAAAT CACATCTTGG
1621AGGATGTGAA CAAGTGTGTG ATAGCCCTCC AAGAGGGCGA TGTGGACACT CTGGACCGGA
1681CTGCAGGGGC CATCAGGGGC CGGGCAGCTC GAGTCATACA CATCATCAAT GCTGAGATGG
1741AGAACTATGA AGCTGGGGTT TATACTGAGA AGGTGTTGGA AGCTACAAAA TTGCTTTCTG
1801AAACAGTGAT GCCACGCTTC GCTGAACAAG TAGAGGTTGC CATTGAAGCC CTGAGTGCCA
1861ACGTTCCTCA ACCGTTTGAG GAGAATGAGT TCATCGATGC CTCTCGCCTG GTGTATGATG
1921GCGTTCGGGA CATCAGAAAG GCTGTGCTGA TGATCAGGAC CCCAGAAGAA CTAGAGGATG
1981ATTCTGACTT TGAGCAAGAA GATTATGATG TGCGTAGCAG GACAAGTGTT CAGACTGAGG
2041ATGACCAGCT CATTGCAGGG CAGAGCGCAC GGGCCATCAT GGCGCAACTA CCGCAGGAGG
2101AGAAGGCAAA AATAGCTGAG CAGGTGGAGA TATTCCATCA AGAGAAAAGC AAGCTGGATG
2161CAGAAGTGGC CAAATGGGAC GACAGCGGCA ATGATATCAT TGTACTGGCC AAGCAGATGT
2221GTATGATCAT GATGGAAATG ACAGACTTCA CAAGAGGCAA AGGCCCATTG AAAAATACAT
2281CTGATGTCAT TAATGCTGCC AAGAAAATTG CCGAAGCAGG TTCTCGAATG GACAAATTAG
2341CTCGTGCTGT GGCTGATCAG TGTCCTGATT CAGCATGTAA GCAGGATTTA TTAGCCTACC
2401TTCAACGAAT TGCCTTGTAT TGCCATCAGC TTAATATCTG CAGCAAGGTG AAGGCAGAAG
2461TGCAGAATCT GGGAGGAGAG CTCATTGTGT CAGGGCTGGA CAGTGCCACA TCGCTTATCC
2521AGGCAGCTAA AAACCTGATG AATGCTGTTG TCCTCACGGT GAAAGCATCC TATGTGGCCT
2581CAACCAAATA CCAGAAGGTC TATGGGACAG CAGCTGTCAA CTCACCTGTT GTGTCTTGGA
2641AGATGAAGGC TCCAGAGAAG AAGCCCCTTG TGAAGAGAGA AAAGCCTGAA GAATTCCAGA
2701CACGAGTTCG ACGAGGTTCT CAGAAGAAAC ACATTTCGCC TGTACAGGCT TTAAGTGAAT
2761TCAAAGCAAT GGATTCCTTC TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
2821attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)