Transcript: Human NM_001324138.1

Homo sapiens zinc finger and BTB domain containing 17 (ZBTB17), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-09-24
Taxon:
Homo sapiens (human)
Gene:
ZBTB17 (7709)
Length:
2562
CDS:
240..2462

Additional Resources:

NCBI RefSeq record:
NM_001324138.1
NBCI Gene record:
ZBTB17 (7709)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001324138.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235730 TGTCCAAGCACATCATCATTC pLKO_005 1852 CDS 100% 10.800 15.120 N ZBTB17 n/a
2 TRCN0000012954 GTGTTCACTTTAAGGCTCATA pLKO.1 334 CDS 100% 4.950 6.930 N ZBTB17 n/a
3 TRCN0000235728 GTGCACCTGGACATCAGTAAC pLKO_005 417 CDS 100% 10.800 8.640 N ZBTB17 n/a
4 TRCN0000012956 CGAGTACTTCAAGATGCTCTT pLKO.1 377 CDS 100% 4.050 3.240 N ZBTB17 n/a
5 TRCN0000244307 GCCAGTTGGCCAATCATATTC pLKO_005 1762 CDS 100% 13.200 9.240 N ZBTB17 n/a
6 TRCN0000235729 GTTCACTTTAAGGCTCATAAA pLKO_005 336 CDS 100% 13.200 9.240 N ZBTB17 n/a
7 TRCN0000012955 CCTGTCCAAGCACATCATCAT pLKO.1 1850 CDS 100% 4.950 3.465 N ZBTB17 n/a
8 TRCN0000012953 GCGGACTTCTATCAGCAGTAT pLKO.1 2301 CDS 100% 4.950 3.465 N ZBTB17 n/a
9 TRCN0000235727 CGAGAGCTCGGAGCAAGAAAT pLKO_005 695 CDS 100% 13.200 7.920 N ZBTB17 n/a
10 TRCN0000413960 CACACTGGAGAGAAGCCTTAC pLKO_005 1872 CDS 100% 6.000 3.000 Y Zfp612 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001324138.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.