Transcript: Human NM_001329738.2

Homo sapiens telomerase RNA component interacting RNase (TRIR), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
TRIR (79002)
Length:
801
CDS:
28..480

Additional Resources:

NCBI RefSeq record:
NM_001329738.2
NBCI Gene record:
TRIR (79002)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001329738.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000074483 GCCTCGTGAGACTTCATAGAA pLKO.1 653 3UTR 100% 5.625 7.875 N TRIR n/a
2 TRCN0000222577 CGGCGTGAACTTGTTCGCCAA pLKO.1 189 CDS 100% 0.720 1.008 N TRIR n/a
3 TRCN0000437696 GCTGTTCAAGCGGAAGATGGA pLKO_005 228 CDS 100% 2.640 2.112 N TRIR n/a
4 TRCN0000123864 CCTGGGACTCTCTGCGATGTA pLKO.1 505 3UTR 100% 1.650 1.155 N Trir n/a
5 TRCN0000327261 CCTGGGACTCTCTGCGATGTA pLKO_005 505 3UTR 100% 1.650 1.155 N Trir n/a
6 TRCN0000428321 GTATTAACAAGTAAAGGTGAC pLKO_005 373 CDS 100% 2.250 1.350 N TRIR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001329738.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08904 pDONR223 100% 85% 84.6% None 11G>A;345_346ins78 n/a
2 ccsbBroad304_08904 pLX_304 0% 85% 84.6% V5 11G>A;345_346ins78 n/a
3 TRCN0000479037 TTTTGATAGCTGTGACGACCTTCA pLX_317 74.2% 85% 84.6% V5 11G>A;345_346ins78 n/a
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