Transcript: Human NM_001346870.1

Homo sapiens NLR family apoptosis inhibitory protein (NAIP), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
NAIP (4671)
Length:
6523
CDS:
691..4902

Additional Resources:

NCBI RefSeq record:
NM_001346870.1
NBCI Gene record:
NAIP (4671)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001346870.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430492 ACGACTACCAAGGCTCATTAG pLKO_005 4743 CDS 100% 10.800 15.120 N NAIP n/a
2 TRCN0000413174 ACATTGCCAAGTACGACATAA pLKO_005 1091 CDS 100% 13.200 10.560 N NAIP n/a
3 TRCN0000417867 ATCCTCAATCTAAGTACTTAA pLKO_005 4832 CDS 100% 13.200 10.560 N NAIP n/a
4 TRCN0000063733 GCCGTGGTGAACTTTGTGAAT pLKO.1 1769 CDS 100% 4.950 3.960 N NAIP n/a
5 TRCN0000063735 CCAGAGACTAAGACCATTCTA pLKO.1 2889 CDS 100% 5.625 3.938 N NAIP n/a
6 TRCN0000063737 GCTTTCAATCAATCACAAGAT pLKO.1 4584 CDS 100% 4.950 3.465 N NAIP n/a
7 TRCN0000063736 GCAGTTAAAGAATCAGGTCTT pLKO.1 2310 CDS 100% 4.050 2.835 N NAIP n/a
8 TRCN0000412891 GAATGAATGGGAGCGAAATTT pLKO_005 3561 CDS 100% 15.000 7.500 Y NAIP n/a
9 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 5901 3UTR 100% 4.950 2.475 Y CFLAR n/a
10 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 5901 3UTR 100% 4.950 2.475 Y C19orf31 n/a
11 TRCN0000063734 GCTGAGTATGATCCTTCCAAA pLKO.1 4108 CDS 100% 4.950 2.475 Y NAIP n/a
12 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 5899 3UTR 100% 4.950 2.475 Y ERN2 n/a
13 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 5899 3UTR 100% 4.950 2.475 Y P3H4 n/a
14 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 5899 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001346870.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.