Transcript: Mouse NM_001347169.1

Mus musculus nardilysin, N-arginine dibasic convertase, NRD convertase 1 (Nrd1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-13
Taxon:
Mus musculus (mouse)
Gene:
Nrd1 (230598)
Length:
4532
CDS:
196..3885

Additional Resources:

NCBI RefSeq record:
NM_001347169.1
NBCI Gene record:
Nrd1 (230598)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001347169.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000031559 CCAAACACTTACGTCAGCAAT pLKO.1 4069 3UTR 100% 4.950 6.930 N Nrd1 n/a
2 TRCN0000351484 CCAAACACTTACGTCAGCAAT pLKO_005 4069 3UTR 100% 4.950 6.930 N Nrd1 n/a
3 TRCN0000031563 GCAACCAAATACAACTCCGAA pLKO.1 3379 CDS 100% 2.640 3.696 N Nrd1 n/a
4 TRCN0000334683 GCAACCAAATACAACTCCGAA pLKO_005 3379 CDS 100% 2.640 3.696 N Nrd1 n/a
5 TRCN0000031561 GCTCATTACATGACCTTAGTT pLKO.1 1558 CDS 100% 5.625 4.500 N Nrd1 n/a
6 TRCN0000334678 GCTCATTACATGACCTTAGTT pLKO_005 1558 CDS 100% 5.625 4.500 N Nrd1 n/a
7 TRCN0000414038 GTGGCACAGCTGGAGTATAAA pLKO_005 2665 CDS 100% 15.000 10.500 N NRDC n/a
8 TRCN0000031560 CCGCTGTCTTTACCATGATAA pLKO.1 2795 CDS 100% 13.200 9.240 N Nrd1 n/a
9 TRCN0000309962 CCGCTGTCTTTACCATGATAA pLKO_005 2795 CDS 100% 13.200 9.240 N Nrd1 n/a
10 TRCN0000031562 GCTGAGATACAAGATGATGAT pLKO.1 697 CDS 100% 4.950 3.465 N Nrd1 n/a
11 TRCN0000351485 GCTGAGATACAAGATGATGAT pLKO_005 697 CDS 100% 4.950 3.465 N Nrd1 n/a
12 TRCN0000150618 GAAGAGGAAGAAGATGATGAT pLKO.1 637 CDS 100% 4.950 2.475 Y SAMD1 n/a
13 TRCN0000413041 AGGAAGAAGAGGAGGAGGAAG pLKO_005 620 CDS 100% 4.050 2.025 Y Myt1 n/a
14 TRCN0000431954 AGAGGAAGAAGATGATGATTA pLKO_005 639 CDS 100% 13.200 6.600 Y Ssxb1 n/a
15 TRCN0000063714 GAAGAAGATGATGATGATGAT pLKO.1 643 CDS 100% 4.950 2.475 Y SET n/a
16 TRCN0000288612 GAAGAAGATGATGATGATGAT pLKO_005 643 CDS 100% 4.950 2.475 Y SET n/a
17 TRCN0000151143 GAGGAAGAAGATGATGATGAA pLKO.1 640 CDS 100% 4.950 2.475 Y SAMD1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001347169.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.