Transcript: Human NM_001348731.2

Homo sapiens kinase D interacting substrate 220 (KIDINS220), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-19
Taxon:
Homo sapiens (human)
Gene:
KIDINS220 (57498)
Length:
7294
CDS:
171..5432

Additional Resources:

NCBI RefSeq record:
NM_001348731.2
NBCI Gene record:
KIDINS220 (57498)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001348731.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000052632 GCCGATCAGAACCTTCATTAA pLKO.1 4799 CDS 100% 13.200 10.560 N KIDINS220 n/a
2 TRCN0000052629 CCGAGTATAGAGATGCCTATA pLKO.1 4258 CDS 100% 1.080 0.864 N KIDINS220 n/a
3 TRCN0000310512 CCGAGTATAGAGATGCCTATA pLKO_005 4258 CDS 100% 1.080 0.864 N KIDINS220 n/a
4 TRCN0000303763 GAGGTGAGATCTGAGTATAAA pLKO_005 5711 3UTR 100% 15.000 10.500 N KIDINS220 n/a
5 TRCN0000331266 GGCCTGCAAGATCCAATTATA pLKO_005 5016 CDS 100% 15.000 10.500 N KIDINS220 n/a
6 TRCN0000052628 CCGGACTTCATGGCTCATATT pLKO.1 3104 CDS 100% 13.200 9.240 N KIDINS220 n/a
7 TRCN0000299847 CCGGACTTCATGGCTCATATT pLKO_005 3104 CDS 100% 13.200 9.240 N KIDINS220 n/a
8 TRCN0000052631 CGAGTATTCAAGACTGAAGAT pLKO.1 2085 CDS 100% 4.950 3.465 N KIDINS220 n/a
9 TRCN0000052630 CGGGAAATTATTGCAGATGTT pLKO.1 3348 CDS 100% 4.950 3.465 N KIDINS220 n/a
10 TRCN0000174250 CGGGAAATTATTGCAGATGTT pLKO.1 3348 CDS 100% 4.950 3.465 N KIDINS220 n/a
11 TRCN0000310514 CGGGAAATTATTGCAGATGTT pLKO_005 3348 CDS 100% 4.950 3.465 N KIDINS220 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001348731.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.