Transcript: Human NM_001353119.1

Homo sapiens centrosomal protein 63 (CEP63), transcript variant 13, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
CEP63 (80254)
Length:
5390
CDS:
410..1897

Additional Resources:

NCBI RefSeq record:
NM_001353119.1
NBCI Gene record:
CEP63 (80254)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001353119.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000138771 GCTCAGCTTGTCAATCGGAAA pLKO.1 965 CDS 100% 4.050 5.670 N CEP63 n/a
2 TRCN0000330448 GCTCAGCTTGTCAATCGGAAA pLKO_005 965 CDS 100% 4.050 5.670 N CEP63 n/a
3 TRCN0000134421 GAGTTACTGTCATCTGAAGTA pLKO.1 1943 3UTR 100% 4.950 3.465 N CEP63 n/a
4 TRCN0000138034 GCAGCTCTTCAGTCTCAAGAA pLKO.1 1229 CDS 100% 4.950 3.465 N CEP63 n/a
5 TRCN0000330449 GCAGCTCTTCAGTCTCAAGAA pLKO_005 1229 CDS 100% 4.950 3.465 N CEP63 n/a
6 TRCN0000134915 CTGAAGTAGCAGCTCTTTAAA pLKO.1 1956 3UTR 100% 15.000 9.000 N CEP63 n/a
7 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 4005 3UTR 100% 4.950 2.475 Y LOC387873 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001353119.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04195 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04195 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000466011 GTCTACCCGGTGCTCGGTATTGGT pLX_317 21.2% 100% 100% V5 n/a
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