Transcript: Human NM_001362719.2

Homo sapiens basic leucine zipper and W2 domains 2 (BZW2), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
BZW2 (28969)
Length:
1599
CDS:
493..1170

Additional Resources:

NCBI RefSeq record:
NM_001362719.2
NBCI Gene record:
BZW2 (28969)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001362719.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000145083 GCGAAGAAGCAATACTGAAAT pLKO.1 1031 CDS 100% 13.200 18.480 N BZW2 n/a
2 TRCN0000430209 TACAGGCTCAAGATTAGATTA pLKO_005 208 5UTR 100% 13.200 18.480 N BZW2 n/a
3 TRCN0000418953 AGGAATACTGCTACGACAACA pLKO_005 950 CDS 100% 4.950 6.930 N Bzw2 n/a
4 TRCN0000139845 CCAACTCTGTTACCTCGTCTT pLKO.1 509 CDS 100% 4.050 5.670 N BZW2 n/a
5 TRCN0000414051 ACCTTGAAGCTGTAGCCAAAT pLKO_005 177 5UTR 100% 10.800 7.560 N Bzw2 n/a
6 TRCN0000139815 CCTCCAGAAGGTTCAGGAATA pLKO.1 936 CDS 100% 10.800 7.560 N BZW2 n/a
7 TRCN0000144193 CAGAAGATTGTGGTTCTCTTT pLKO.1 991 CDS 100% 4.950 3.465 N BZW2 n/a
8 TRCN0000139465 GATGACCAACCACTGTGTGTT pLKO.1 322 5UTR 100% 4.950 3.465 N BZW2 n/a
9 TRCN0000140132 GCTGATGTTCTGAGCGAAGAA pLKO.1 1018 CDS 100% 4.950 3.465 N BZW2 n/a
10 TRCN0000096856 CCGAAACTATGCTCAGGTCTT pLKO.1 370 5UTR 100% 4.050 2.835 N Bzw2 n/a
11 TRCN0000140053 CCGAAACTATGCTCAGGTCTT pLKO.1 370 5UTR 100% 4.050 2.835 N BZW2 n/a
12 TRCN0000141844 GAAACAGCAGTGATTGGTCTT pLKO.1 778 CDS 100% 4.050 2.835 N BZW2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001362719.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03047 pDONR223 100% 53.6% 53.6% None 0_1ins582 n/a
2 ccsbBroad304_03047 pLX_304 0% 53.6% 53.6% V5 0_1ins582 n/a
3 TRCN0000473591 AGGATATTAACCGCGTTTGTCCAC pLX_317 33.5% 53.6% 53.6% V5 0_1ins582 n/a
4 ccsbBroadEn_15799 pDONR223 0% 53.6% 53.6% None 0_1ins582 n/a
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