Transcript: Human NM_001363692.1

Homo sapiens spectrin repeat containing nuclear envelope family member 3 (SYNE3), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-01
Taxon:
Homo sapiens (human)
Gene:
SYNE3 (161176)
Length:
13487
CDS:
15..2927

Additional Resources:

NCBI RefSeq record:
NM_001363692.1
NBCI Gene record:
SYNE3 (161176)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001363692.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000282854 AGCCTGGGAGCAGCAGATTAA pLKO_005 1007 CDS 100% 13.200 9.240 N SYNE3 n/a
2 TRCN0000179208 GCAGGACATTGCCAAAGATTT pLKO.1 800 CDS 100% 13.200 9.240 N SYNE3 n/a
3 TRCN0000263891 ATCAATCCCATGGATCCTATT pLKO_005 2352 CDS 100% 10.800 7.560 N SYNE3 n/a
4 TRCN0000263890 CAGAAGGTCAGCATCTCTTTG pLKO_005 2557 CDS 100% 10.800 7.560 N SYNE3 n/a
5 TRCN0000135793 CCTGGCATTCTCCATAAAGAA pLKO.1 12248 3UTR 100% 5.625 3.938 N n/a
6 TRCN0000134418 GTGGTAAATTTGGGACTTGTA pLKO.1 11546 3UTR 100% 4.950 3.465 N n/a
7 TRCN0000136517 CTTTCTGAAACGCTTGCTTCT pLKO.1 11287 3UTR 100% 4.050 2.835 N n/a
8 TRCN0000180861 GCTGTACAAGTCCAAGCTGAA pLKO.1 2648 CDS 100% 4.050 2.835 N SYNE3 n/a
9 TRCN0000135810 CGGAGTTTCTTCTTAGTGCTA pLKO.1 13306 3UTR 100% 2.640 1.848 N n/a
10 TRCN0000282853 CTGCAGAGCTGCATCCATATC pLKO_005 3032 3UTR 100% 10.800 6.480 N SYNE3 n/a
11 TRCN0000264485 TGCTGCACAACGTGGACAATC pLKO_005 490 CDS 100% 10.800 6.480 N Syne3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001363692.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000476789 AGCCACTTGTTGCCACTCCAACCA pLX_317 .8% 99.3% 99.2% V5 (many diffs) n/a
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