Construct: ORF TRCN0000476789

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005179.1_s317c1
Derived from:
BRDN0000391324
DNA Barcode:
AGCCACTTGTTGCCACTCCAACCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYNE3 (161176)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476789
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 161176 SYNE3 spectrin repeat containing ... NM_152592.5 99.6% 99.5% (many diffs)
2 human 161176 SYNE3 spectrin repeat containing ... XM_005267377.4 99.6% 99.5% (many diffs)
3 human 161176 SYNE3 spectrin repeat containing ... XM_006720063.4 99.6% 99.5% (many diffs)
4 human 161176 SYNE3 spectrin repeat containing ... NM_001363692.1 99.3% 99.2% (many diffs)
5 human 161176 SYNE3 spectrin repeat containing ... XM_011536515.3 98.8% 98.7% (many diffs)
6 human 161176 SYNE3 spectrin repeat containing ... XM_017021057.1 50% 49.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2991
ORF length:
2922
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gactcagcag ccccaggacg actttgacag gagcgtggag gatgcccagg
121catggatgaa ggctgtgcag gaccagctgc aggtcaatga caacacgcag ggaccccgcg
181cggccctgga ggccaggctg tgggagaccg agaaaatatg ccagctggag cccgaggggc
241gtgtgagggt ggacctcgtg ctacggatgg ctgaagccct cttggcatgc tgccctgggg
301accagaagcc cgggatcctg gcccggctga aggacatcaa ggcccaatgg gaggagacag
361tcacctacat gactcactgt cacagccgca tcgagtgggt gtggctgcac tggagcgagt
421acctgctggc ccgagatgag ttctaccgct ggttccagaa gatgatggtc acactggagc
481cccacatcga gctccagctg ggcctgaagg agaagcagtg gcagctgagc cacgcccagg
541tgctgctgca caacgtggac aaccaggcgg tgctcctgga ccggctgctg gaggaggcag
601cctccctgtt caacaggatc ggggacccca gcgtggacga agatgcccag aagagaatga
661aggctgagta cgatgcagtg aaggccaagg cccagaagcg ggtagatctg ctggagcagg
721tggcccggga gcatgaggag taccaggcag gtgtggacga gttccaactg tggctgaagg
781cggtggtgga gaaggtgaat ggctgcctgg ggctgcactg caagctgccc atcacgcagc
841gcctctccac actgcaggac attgccaaag attttcccag gggcgaggag tctctggaga
901cgctggagga gcagtctgcg ggtgtcattc ggaacacctc tcctttgggt gcagagaaga
961tcaccggaga actggaagag atgaggaaag ttctggagaa gctgcgcgcc ctctgggagg
1021aggaggagga gcggctgcgg ggcctgctcc ggtccagggg agcctgggag cagcagatta
1081agcagctgga ggctgagctc agtgagttca ggatggtcct gcagaggctg gcccaggagg
1141gcctgcagcc tgcggcgaaa gcggggaccg aggacgaact ggtggcacac tggagacgct
1201actcggcaac acgggcggcg ctggcctcgg aggagccccg ggtggaccgg ctgcaagccc
1261agctgaagga gctcatcgtc ttccctcaca acctgaagcc gctctctgat agtgtcatcg
1321ctaccatcca ggagtatcag agcctgaagg tgaagagcgc gaggctgcgc aatgccgcgg
1381cggtggagct gtggcagcat ttccagcggc ctctgcagga tctgcagctg tggaaggccc
1441tggcccagcg gctcttggag gtcactgcca gcctgccgga cctgccttcc cttcacacct
1501tcctgcccca gatcgaggca gccctgatgg aaagctcccg cctgaaagag ctgctgacga
1561tgctgcagct gaagaaagac ctcctgattg gcatctttgg ccaggagaga gccacggcac
1621tcctggagca ggtggcaggt tccatgaggg acagagacct gctgcataac agcctcctgc
1681agaggaaaag caaactgcag agcctgctcg ctcagcacaa agactttgga gcagcttttg
1741agcccctgca gaggaagctc ttggacctcc aggtcagggt ccaagccgag aaggggcttc
1801agcgggacct tcctggaaaa caggcccagc tctcaaggtt gcaggggctg caggaagagg
1861ggctggactt gggggcacag atggaggctg caaggcctct ggtccaggag aaccccaacc
1921accagcacaa aatggaccag ctttcctccg acttccaggc cctgcagagg tctctggagg
1981accttgtgga caggtgtcgg cagagtgtgc aggagcactg caccttcagc caccagctgc
2041tggagctgcg gcagtggatc gttgtgacca tgcaaaagct ggaggcacac cggggagagg
2101cgggcccggg ggatgccgag tcccaagagg ccgagtttga gaggctggtg gcagaattcc
2161cggagaagga ggcccagctg tccctggtgg aagcgcaggg ctggctggtg atggagaagt
2221cttctccgga gggtgctgcc gtggtgcagg aggagctcag ggagctggca gagtcgtggc
2281gggccttgag gctgctggaa gaaagtctgc tgagcctcat cagaaactgg catctgcaga
2341ggatggaagt ggattcgggg aagaaaatgg ttttcaccaa caacatccca aagtcaggat
2401ttctcatcaa tcccatggat cctattccca ggcatcgtcg acgcgcaaat ctacaggaag
2461aagaagggag ccatgaagat ttctcccagc tcctgaggaa ctttgggcag tggttgcagg
2521tggaaaactc caagctggtt agaatcatcg caatgagaac ttctacagct gaggacttga
2581ggaccagaaa atcgaagctg caggagctgg aggctcgggt gccagaaggt cagcatctct
2641ttgagaacct ccttcgtctc gggccagcaa gggggacctc ggatgagctg gaagatctgc
2701gctaccagtg gatgctgtac aagtccaagc tgaaggactc tggccacctg ctgacacaaa
2761gttctccagg ggagccgact ggattccaaa agactcggcg gtggcgagga ctgggctccc
2821tcttccggag ggcgtgctgt gtggcgctcc cactgcagct gcttctgctg ctgttcctcc
2881tcctgctgtt cctgctccca atcagggaag aggaccgcag ctgcaccctg gccaacaact
2941tcgcccgctc cttcacgctc atgctgcgct acaatggCCC ACCACCCACC TTGCCAACTT
3001TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
3061CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
3121CTTGTGGAAA GGACGAAGCC ACTTGTTGCC ACTCCAACCA ACGCGTTAAG TCgacaatca
3181acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)