Transcript: Human NM_001363878.1

Homo sapiens oxysterol binding protein like 2 (OSBPL2), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-08-27
Taxon:
Homo sapiens (human)
Gene:
OSBPL2 (9885)
Length:
4064
CDS:
572..1738

Additional Resources:

NCBI RefSeq record:
NM_001363878.1
NBCI Gene record:
OSBPL2 (9885)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001363878.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000156013 CAAATCAGAAAGTCACGGGAA pLKO.1 282 5UTR 100% 2.160 3.024 N OSBPL2 n/a
2 TRCN0000156686 GCCAGGGATTGCCTTCTAAAT pLKO.1 2203 3UTR 100% 13.200 10.560 N OSBPL2 n/a
3 TRCN0000427091 GGGAGAAACGTATGAATTAAT pLKO_005 763 CDS 100% 15.000 10.500 N OSBPL2 n/a
4 TRCN0000434327 GAAGATTTAGGATTCAGATTT pLKO_005 788 CDS 100% 13.200 9.240 N OSBPL2 n/a
5 TRCN0000429830 GGATTACTTTGAGCGGAATTT pLKO_005 1693 CDS 100% 13.200 9.240 N OSBPL2 n/a
6 TRCN0000423567 TGGGATCATCGTCTTCATTAA pLKO_005 1950 3UTR 100% 13.200 9.240 N OSBPL2 n/a
7 TRCN0000156185 CGGCAAACCATTTAATCCACT pLKO.1 739 CDS 100% 2.640 1.848 N OSBPL2 n/a
8 TRCN0000151119 GCTCTTTATGATCTATGGCAA pLKO.1 1177 CDS 100% 2.640 1.848 N OSBPL2 n/a
9 TRCN0000155678 CAGAAAGTCACGGGAATGATT pLKO.1 287 5UTR 100% 5.625 3.375 N OSBPL2 n/a
10 TRCN0000150659 GAGCTGCTCAAACATAATGAA pLKO.1 959 CDS 100% 5.625 3.375 N OSBPL2 n/a
11 TRCN0000154381 CGGGAATGATTGACTTAGACA pLKO.1 297 5UTR 100% 3.000 1.800 N OSBPL2 n/a
12 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3060 3UTR 100% 5.625 2.813 Y KLHL30 n/a
13 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3060 3UTR 100% 5.625 2.813 Y EID2B n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001363878.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02265 pDONR223 100% 80.8% 80.8% None 0_1ins276 n/a
2 ccsbBroad304_02265 pLX_304 0% 80.8% 80.8% V5 0_1ins276 n/a
3 TRCN0000466865 CTAACAAACCCCGGCATAGGGAAA pLX_317 30.5% 80.8% 80.8% V5 0_1ins276 n/a
Download CSV