Transcript: Human NM_001369035.1

Homo sapiens Cdc42 guanine nucleotide exchange factor 9 (ARHGEF9), transcript variant 17, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
ARHGEF9 (23229)
Length:
4806
CDS:
258..1745

Additional Resources:

NCBI RefSeq record:
NM_001369035.1
NBCI Gene record:
ARHGEF9 (23229)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001369035.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000047616 CGAGCAACTGAAGGTAATCTT pLKO.1 620 CDS 100% 5.625 4.500 N ARHGEF9 n/a
2 TRCN0000226310 CAACCGGGAGTTGGCATTTAA pLKO_005 263 CDS 100% 15.000 10.500 N Arhgef9 n/a
3 TRCN0000047613 CGCATTGACATGGATAAATAT pLKO.1 1287 CDS 100% 15.000 10.500 N ARHGEF9 n/a
4 TRCN0000218589 CAAGATGGATTCTGGATATAC pLKO_005 756 CDS 100% 13.200 9.240 N Arhgef9 n/a
5 TRCN0000047614 CCAAGATGGATTCTGGATATA pLKO.1 755 CDS 100% 13.200 9.240 N ARHGEF9 n/a
6 TRCN0000047615 CCTCTGCAAGAAGGACCTAAT pLKO.1 1238 CDS 100% 10.800 7.560 N ARHGEF9 n/a
7 TRCN0000047617 GAGGAGATACATCTGTTCTTT pLKO.1 1392 CDS 100% 5.625 3.938 N ARHGEF9 n/a
8 TRCN0000258242 ATGTGACTCAGCAGATCAATG pLKO_005 1030 CDS 100% 10.800 7.560 N Arhgef9 n/a
9 TRCN0000166364 CACACACACACACACACACAA pLKO.1 1893 3UTR 100% 4.950 2.475 Y KAAG1 n/a
10 TRCN0000172440 CACACACACACACACAGACAA pLKO.1 1875 3UTR 100% 4.950 2.475 Y LINC00955 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001369035.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02740 pDONR223 100% 95.9% 95.9% None 0_1ins63 n/a
2 ccsbBroad304_02740 pLX_304 0% 95.9% 95.9% V5 0_1ins63 n/a
3 TRCN0000471927 GCGTGCTCCTGAGGTACAGTGCCC pLX_317 31.3% 95.9% 95.9% V5 0_1ins63 n/a
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