Construct: ORF TRCN0000471927

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016290.1_s317c1
Derived from:
ccsbBroadEn_02740
DNA Barcode:
GCGTGCTCCTGAGGTACAGTGCCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARHGEF9 (23229)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471927
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369030.1 100% 100%
2 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_015185.3 100% 100%
3 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... XM_024452356.1 99.5% 99.4% 1_1delAinsATGACGT
4 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369031.1 99.4% 99.6% 1_4delATGT;9_10insGTTG
5 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369032.1 99.4% 99.6% 1_4delATGT;9_10insGTTG
6 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... XM_017029364.1 98.5% 98.4% 0_1insATG;2T>C;6_23del
7 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001353921.2 98.5% 98% 4_5delCAinsAC;8_28del
8 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001353923.1 97.2% 96.9% (many diffs)
9 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001330495.2 95.9% 95.9% 0_1ins63
10 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369033.1 95.9% 95.9% 0_1ins63
11 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369034.1 95.9% 95.9% 0_1ins63
12 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369035.1 95.9% 95.9% 0_1ins63
13 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369036.1 95.9% 95.9% 0_1ins63
14 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369037.1 95.9% 95.9% 0_1ins63
15 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369038.1 95.9% 95.9% 0_1ins63
16 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... XM_024452357.1 95.9% 95.9% 0_1ins63
17 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001353928.2 91.4% 91.4% 922_923ins132
18 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001353922.2 90.1% 89.6% 4_5delCAinsAC;8_28del;943_944ins132
19 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001173479.2 89.2% 87.9% (many diffs)
20 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001353926.2 88.2% 87.7% (many diffs)
21 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369040.1 88.2% 87.7% (many diffs)
22 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001353924.2 88.1% 87.7% 0_1ins164;4_5delAC;8_9insTCCTGCCAGCTTTGTGAG
23 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369039.1 88.1% 87.7% 0_1ins164;4_5delAC;8_9insTCCTGCCAGCTTTGTGAG
24 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001353927.2 87.4% 87.4% 0_1ins63;859_860ins132
25 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369041.1 87.4% 87.4% 0_1ins63;859_860ins132
26 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001173480.2 80.2% 80.2% 0_1ins306
27 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369042.1 80.2% 80.2% 0_1ins306
28 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... XM_017029374.2 79.6% 79.2% (many diffs)
29 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... XM_017029377.2 70.7% 68.7% 1055_1056ins244;1095_1096ins209
30 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... XM_017029378.2 67.6% 66.7% (many diffs)
31 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369043.1 66.6% 64.7% 0_1ins63;992_993ins244;1032_1033ins209
32 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369044.1 66.6% 64.7% 0_1ins63;992_993ins244;1032_1033ins209
33 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... NM_001369045.1 64.7% 64.7% 0_1ins414;508_509ins132
34 human 23229 ARHGEF9 Cdc42 guanine nucleotide ex... XM_017029380.2 58.9% 56.5% (many diffs)
35 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... XM_011247582.2 93.4% 98.8% (many diffs)
36 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... NM_001033329.3 92.9% 98.4% (many diffs)
37 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... XM_011247583.2 92.9% 98.4% (many diffs)
38 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... XM_006527992.3 92% 96.9% (many diffs)
39 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... NM_001290384.1 89.3% 94.7% (many diffs)
40 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... NM_001290385.1 89.3% 94.7% (many diffs)
41 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... XM_017318473.1 89.3% 94.7% (many diffs)
42 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... XM_017318474.1 84.9% 88.4% (many diffs)
43 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... XM_017318475.1 82.2% 87.4% (many diffs)
44 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... XM_017318476.1 81.7% 87% (many diffs)
45 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... XM_011247585.2 78.2% 83.3% (many diffs)
46 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... XM_017318477.1 78.2% 83.3% (many diffs)
47 mouse 236915 Arhgef9 CDC42 guanine nucleotide ex... XM_017318478.1 78.2% 83.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1617
ORF length:
1548
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gacgttgctg atcactggag attccatcgt tagtgctgag gcagtatggg
121atcacgtcac catggccaac cgggagttgg catttaaagc tggcgacgtc atcaaagtct
181tggatgcttc caacaaggat tggtggtggg gccagatcga cgatgaggag ggatggtttc
241ctgccagctt tgtgaggctc tgggtgaacc aggaggatga ggtggaggag gggcccagcg
301atgtgcagaa cggacacctg gaccccaatt cagactgcct ctgtctgggg cggccactac
361agaaccggga ccagatgcgg gccaatgtca tcaatgagat aatgagcact gagcgtcact
421acatcaagca cctcaaggat atttgtgagg gctatctgaa gcagtgccgg aagagaaggg
481acatgttcag tgacgagcaa ctgaaggtaa tctttgggaa cattgaagat atctacagat
541ttcagatggg ctttgtgaga gacctggaga aacagtataa caatgatgac ccccacctca
601gcgagatagg accctgcttc ctagagcacc aagatggatt ctggatatac tctgagtatt
661gtaacaacca cctggatgct tgcatggagc tctccaaact gatgaaggac agccgctacc
721agcacttctt tgaggcctgt cgcctcttgc agcagatgat tgacattgct atcgatggtt
781tccttttgac tccagtgcag aagatctgca agtatccctt acagttggct gagctcctaa
841agtatactgc ccaagaccac agtgactaca ggtatgtggc agctgctttg gctgtcatga
901gaaatgtgac tcagcagatc aacgaacgca agcgacgttt agagaatatt gacaagattg
961ctcagtggca ggcttctgtc ctagactggg agggcgagga catcctagac aggagctcgg
1021agctgatcta cactggggag atggcctgga tctaccagcc ctacggccgc aaccagcagc
1081gggtcttctt cctgtttgac caccagatgg tcctctgcaa gaaggaccta atccGGAGAG
1141ACATCCTGTA CTACAAAGGC CGCATTGACA TGGATAAATA TGAGGTAGTT GACATTGAGG
1201ATGGCAGAGA TGATGACTTC AATGTCAGCA TGAAGAATGC CTTTAAGCTT CACAACAAGG
1261AGACTGAGGA GATACATCTG TTCTTTGCCA AGAAGCTGGA GGAAAAAATA CGCTGGCTCA
1321GGGCTTTCAG AGAAGAGAGG AAAATGGTAC AGGAAGATGA AAAAATTGGC TTTGAAATTT
1381CTGAAAACCA GAAGAGGCAG GCTGCAATGA CTGTGAGAAA AGTCCCTAAG CAAAAAGGTG
1441TCAACTCTGC CCGCTCAGTT CCTCCTTCCT ACCCACCACC GCAGGACCCG TTAAACCACG
1501GCCAGTACCT GGTCCCCGAC GGCATCGCTC AGTCGCAGGT CTTTGAGTTC ACCGAACCCA
1561AGCGCAGCCA GTCACCATTC TGGCAAAACT TCAGCAGGTT AACCCCCTTC AAAAAATTGC
1621CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1681TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1741ATATATCTTG TGGAAAGGAC GAGCGTGCTC CTGAGGTACA GTGCCCACGC GTTAAGTCga
1801caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)