Transcript: Human NM_002023.5

Homo sapiens fibromodulin (FMOD), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
FMOD (2331)
Length:
2943
CDS:
98..1228

Additional Resources:

NCBI RefSeq record:
NM_002023.5
NBCI Gene record:
FMOD (2331)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002023.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000152466 CCGCATGAAGTATGTGTACTT pLKO.1 412 CDS 100% 0.495 0.693 N FMOD n/a
2 TRCN0000152163 CCAAGCAGGAAGATTCTATAT pLKO.1 2243 3UTR 100% 13.200 9.240 N FMOD n/a
3 TRCN0000151908 CACAACAGTCTAACCAACAAT pLKO.1 926 CDS 100% 5.625 3.938 N FMOD n/a
4 TRCN0000153650 CCTCAGGCTTAGATCAATGTA pLKO.1 1957 3UTR 100% 5.625 3.938 N FMOD n/a
5 TRCN0000153651 CTGTACATGGAGCACAACAAT pLKO.1 842 CDS 100% 5.625 3.938 N FMOD n/a
6 TRCN0000153486 CCAAGGCAATAGGATCAATGA pLKO.1 1057 CDS 100% 4.950 3.465 N FMOD n/a
7 TRCN0000153199 CCACAACAGTCTAACCAACAA pLKO.1 925 CDS 100% 4.950 3.465 N FMOD n/a
8 TRCN0000154152 CAGTATGAAGATGACCCTCAT pLKO.1 152 CDS 100% 4.050 2.835 N FMOD n/a
9 TRCN0000156734 GTATGAGACCTACGAGCCTTA pLKO.1 235 CDS 100% 4.050 2.835 N FMOD n/a
10 TRCN0000156892 GTCCCACAACAGTCTAACCAA pLKO.1 922 CDS 100% 3.000 2.100 N FMOD n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002023.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00584 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00584 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000468206 CCTGTATACAGTACGATAGAGACC pLX_317 39.2% 100% 100% V5 n/a
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