Transcript: Human NM_002371.4

Homo sapiens mal, T cell differentiation protein (MAL), transcript variant a, mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
MAL (4118)
Length:
1084
CDS:
86..547

Additional Resources:

NCBI RefSeq record:
NM_002371.4
NBCI Gene record:
MAL (4118)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002371.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000117989 ACCTTGATCATCCTGTACATA pLKO.1 287 CDS 100% 5.625 7.875 N MAL n/a
2 TRCN0000424888 TGCTAGGGTCACCTCCTGTTT pLKO_005 788 3UTR 100% 4.950 6.930 N MAL n/a
3 TRCN0000428949 TCACGATGCAAGACGGCTTCA pLKO_005 417 CDS 100% 4.050 5.670 N MAL n/a
4 TRCN0000117988 CCATGCGGTGTTCTCTTTAAT pLKO.1 508 CDS 100% 15.000 10.500 N MAL n/a
5 TRCN0000422548 CCCACTTTCCGGCATAACTTT pLKO_005 597 3UTR 100% 5.625 3.938 N MAL n/a
6 TRCN0000117991 CCCGACTTGCTCTTCATCTTT pLKO.1 152 CDS 100% 5.625 3.938 N MAL n/a
7 TRCN0000117990 CGGTGTTCTCTTTAATCAGAT pLKO.1 513 CDS 100% 4.950 3.465 N MAL n/a
8 TRCN0000117987 GCAGTAGAACTTGAGCTGAAA pLKO.1 552 3UTR 100% 4.950 3.465 N MAL n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002371.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00971 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00971 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000473853 AGATTTAGCGGCTTCATCCCCAAA pLX_317 100% 100% 100% V5 n/a
Download CSV