Transcript: Human NM_002518.4

Homo sapiens neuronal PAS domain protein 2 (NPAS2), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
NPAS2 (4862)
Length:
4020
CDS:
299..2773

Additional Resources:

NCBI RefSeq record:
NM_002518.4
NBCI Gene record:
NPAS2 (4862)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002518.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234492 AGTCTCAGCGCAAACGGAAAT pLKO_005 481 CDS 100% 10.800 15.120 N NPAS2 n/a
2 TRCN0000234495 GCTATGACTACTACCACATTG pLKO_005 1149 CDS 100% 10.800 15.120 N NPAS2 n/a
3 TRCN0000022121 GCTTCATTATCGCAGTGACAA pLKO.1 582 CDS 100% 4.950 6.930 N NPAS2 n/a
4 TRCN0000022119 CCTCAAGAAGTTCCCACAAAT pLKO.1 1530 CDS 100% 13.200 9.240 N NPAS2 n/a
5 TRCN0000234493 TCGTCTGGCAACACCACAATT pLKO_005 988 CDS 100% 13.200 9.240 N NPAS2 n/a
6 TRCN0000234494 ACAGAGCACCTCCAATCATAG pLKO_005 1095 CDS 100% 10.800 7.560 N NPAS2 n/a
7 TRCN0000234496 TCACGCTCTTGATCGTCTTTC pLKO_005 3149 3UTR 100% 10.800 7.560 N NPAS2 n/a
8 TRCN0000022122 CCCAAAGGAATTTCCAACTTA pLKO.1 832 CDS 100% 5.625 3.938 N NPAS2 n/a
9 TRCN0000022120 GCAAACGGAAATCTGTGACAT pLKO.1 490 CDS 100% 4.950 3.465 N NPAS2 n/a
10 TRCN0000022123 CCAATGAGAAGCTCACAGCTA pLKO.1 2135 CDS 100% 2.640 1.584 N NPAS2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002518.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06653 pDONR223 100% 99.8% 99.8% None 528C>T;1180A>G;2130C>T n/a
2 ccsbBroad304_06653 pLX_304 0% 99.8% 99.8% V5 528C>T;1180A>G;2130C>T n/a
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