Transcript: Human NM_003288.4

Homo sapiens TPD52 like 2 (TPD52L2), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-07-14
Taxon:
Homo sapiens (human)
Gene:
TPD52L2 (7165)
Length:
2310
CDS:
97..717

Additional Resources:

NCBI RefSeq record:
NM_003288.4
NBCI Gene record:
TPD52L2 (7165)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_003288.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000166604 CCCTGTCTTTAGCACCCTTTA pLKO.1 1659 3UTR 100% 10.800 15.120 N TPD52L2 n/a
2 TRCN0000280926 CCCTGTCTTTAGCACCCTTTA pLKO_005 1659 3UTR 100% 10.800 15.120 N TPD52L2 n/a
3 TRCN0000159392 GACCATAAAGTCTAAGGTTGT pLKO.1 612 CDS 100% 4.050 5.670 N TPD52L2 n/a
4 TRCN0000280922 GACCATAAAGTCTAAGGTTGT pLKO_005 612 CDS 100% 4.050 5.670 N TPD52L2 n/a
5 TRCN0000161679 GCGGAGGGTTTGAAAGAATAT pLKO.1 981 3UTR 100% 13.200 10.560 N TPD52L2 n/a
6 TRCN0000280857 GCGGAGGGTTTGAAAGAATAT pLKO_005 981 3UTR 100% 13.200 10.560 N TPD52L2 n/a
7 TRCN0000166214 CTTGGAGACATGAGGAACTCT pLKO.1 559 CDS 100% 3.000 2.100 N TPD52L2 n/a
8 TRCN0000280924 CTTGGAGACATGAGGAACTCT pLKO_005 559 CDS 100% 3.000 2.100 N TPD52L2 n/a
9 TRCN0000160809 CTCTACAAGAAGACTCAGGAA pLKO.1 469 CDS 100% 2.640 1.848 N TPD52L2 n/a
10 TRCN0000166346 CTTACCAAGGTGGAAGAGGAA pLKO.1 253 CDS 100% 2.640 1.848 N TPD52L2 n/a
11 TRCN0000165132 GTGGAATGAGAAAGTGACCCA pLKO.1 441 CDS 100% 0.660 0.462 N TPD52L2 n/a
12 TRCN0000162138 CTTGGAGAGTGGAATGAGAAA pLKO.1 433 CDS 100% 4.950 2.970 N TPD52L2 n/a
13 TRCN0000166528 CAGGAAACTCTTTCACAGGCA pLKO.1 484 CDS 100% 0.660 0.396 N TPD52L2 n/a
14 TRCN0000280925 CAGGAAACTCTTTCACAGGCA pLKO_005 484 CDS 100% 0.660 0.396 N TPD52L2 n/a
15 TRCN0000087990 GACCTCTACAAGAAGACTCAA pLKO.1 466 CDS 100% 4.950 3.465 N Tpd52l2 n/a
16 TRCN0000312145 GACCTCTACAAGAAGACTCAA pLKO_005 466 CDS 100% 4.950 3.465 N Tpd52l2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_003288.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01699 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01699 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000473459 ACACTAGGGGAACCTCTCCGGAAC pLX_317 79.9% 100% 100% V5 n/a
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