Construct: ORF TRCN0000473459
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015125.1_s317c1
- Derived from:
- ccsbBroadEn_01699
- DNA Barcode:
- ACACTAGGGGAACCTCTCCGGAAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TPD52L2 (7165)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473459
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7165 | TPD52L2 | TPD52 like 2 | NM_003288.4 | 100% | 100% | |
| 2 | human | 7165 | TPD52L2 | TPD52 like 2 | NM_199362.3 | 93.6% | 93.6% | 471_512del |
| 3 | human | 7165 | TPD52L2 | TPD52 like 2 | NM_199359.3 | 90.2% | 90.2% | 314_315ins60 |
| 4 | human | 7165 | TPD52L2 | TPD52 like 2 | NM_199360.3 | 89.9% | 89.9% | 471_539del |
| 5 | human | 7165 | TPD52L2 | TPD52 like 2 | XM_011529035.3 | 89% | 82.6% | (many diffs) |
| 6 | human | 7165 | TPD52L2 | TPD52 like 2 | NM_001243891.2 | 87.8% | 87.8% | 90_91ins75 |
| 7 | human | 7165 | TPD52L2 | TPD52 like 2 | NM_199363.3 | 84.5% | 84.5% | 314_315ins60;411_452del |
| 8 | human | 7165 | TPD52L2 | TPD52 like 2 | NM_199361.3 | 81.2% | 81.2% | 314_315ins60;411_479del |
| 9 | human | 7165 | TPD52L2 | TPD52 like 2 | XM_011529034.3 | 80% | 74.5% | (many diffs) |
| 10 | human | 7165 | TPD52L2 | TPD52 like 2 | NM_001243895.1 | 79.5% | 71.1% | 474_475ins49;570_666del |
| 11 | human | 7165 | TPD52L2 | TPD52 like 2 | NM_001243892.2 | 79.1% | 79.1% | 17_18ins69;245_246ins60 |
| 12 | human | 7165 | TPD52L2 | TPD52 like 2 | NM_001243894.1 | 73.7% | 73.7% | 314_315ins162 |
| 13 | human | 7165 | TPD52L2 | TPD52 like 2 | XM_017028038.2 | 71.3% | 66.1% | (many diffs) |
| 14 | human | 7165 | TPD52L2 | TPD52 like 2 | NR_045090.2 | 25.4% | 1_96del;470_471ins31;684_2279del | |
| 15 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | NM_001291200.1 | 88.5% | 91.2% | (many diffs) |
| 16 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | NM_025482.3 | 82.9% | 85.4% | (many diffs) |
| 17 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | NM_001291197.1 | 82.5% | 85% | (many diffs) |
| 18 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | XM_006500694.3 | 79.6% | 82% | (many diffs) |
| 19 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | NM_001291203.1 | 79.3% | 81.5% | (many diffs) |
| 20 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | XM_006500693.2 | 79.3% | 81.7% | (many diffs) |
| 21 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | NM_001291202.1 | 74.2% | 76.3% | (many diffs) |
| 22 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | NM_001291201.1 | 73.9% | 76% | (many diffs) |
| 23 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | XM_006500697.3 | 71.3% | 73.3% | (many diffs) |
| 24 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | XM_006500696.3 | 71% | 73% | (many diffs) |
| 25 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | XM_006500701.1 | 60% | 62.1% | (many diffs) |
| 26 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | NM_001291204.1 | 41.3% | 25.2% | (many diffs) |
| 27 | mouse | 66314 | Tpd52l2 | tumor protein D52-like 2 | NR_111899.1 | 14.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 684
- ORF length:
- 618
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga ctccgccggc caagatatca acctgaattc tcctaacaaa ggtctgctgt 121 ctgactccat gacggatgtt cctgtcgaca caggtgtggc tgcccggact cctgctgttg 181 agggTCTGAC AGAGGCTGAG GAGGAGGAGC TCAGGGCTGA GCTTACCAAG GTGGAAGAGG 241 AAATTGTCAC TCTGCGCCAG GTCCTGGCAG CCAAGGAGAG GCACTGTGGA GAGCTCAAGA 301 GGAGGCTGGG CCTCTCCACC CTGGGGGAGC TGAAACAGAA CCTGTCCAGG AGCTGGCATG 361 ACGTGCAGGT CTCTAGCGCC TATGTGAAAA CTTCTGAGAA ACTTGGAGAG TGGAATGAGA 421 AAGTGACCCA GTCAGACCTC TACAAGAAGA CTCAGGAAAC TCTTTCACAG GCAGGACAGA 481 AGACTTCAGC TGCCCTGTCC ACAGTGGGCT CTGCCATCAG CAGGAAGCTT GGAGACATGA 541 GGAACTCTGC GACCTTCAAG TCGTTTGAGG ACCGAGTTGG GACCATAAAG TCTAAGGTTG 601 TGGGTGACAG AGAGAACGGC AGTGACAACC TCCCTTCCTC AGCGGGGAGT GGTGACAAGC 661 CCCTGTCGGA TCCCGCACCT TTCTACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 721 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 781 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA CACTAGGGGA 841 ACCTCTCCGG AACACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 901 att